View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_high_20 (Length: 289)
Name: NF9798_high_20
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 12038896 - 12039153
Alignment:
| Q |
14 |
agattgtgtgtttgagaaagctaaaaatctgaggaccattcttttgccatacaacactgacaaccctcggcttcctgacgaggtacagatgacaacatca |
113 |
Q |
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| T |
12038896 |
agattgtgtgtttgagaaagctaaaaaactgaggaccattcttttgccatacaacactgacaaccctcggcttcctgacgaggtacagatgacaacatca |
12038995 |
T |
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| Q |
114 |
acctgtgataagatctttaacaccttcaaggctatgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattgaagaggtgaagt |
213 |
Q |
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| T |
12038996 |
acctgtgataagatctttaacaccttcaaagctatgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattgaagaggtgaagt |
12039095 |
T |
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| Q |
214 |
acttgaggtatctagatctttctcataacaacatagagaagcttcctagttgcatcac |
271 |
Q |
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| T |
12039096 |
acttgaggtatctagatctttctcataacaacatagagaagcttcctagttgcatcac |
12039153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 11860135 - 11860385
Alignment:
| Q |
21 |
gtgtttgagaaagctaaaaatctgaggaccattcttttgccatacaacactgacaaccctcggcttcctgacgaggtacagatgacaacatcaacctgtg |
120 |
Q |
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| T |
11860135 |
gtgtttcagaaagcaaagaaactaaggacctttcttttgccatacaacattaacaaccctcggcttccgtacgaggtaaaggtgacaacatcaacttgtg |
11860234 |
T |
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| Q |
121 |
ataagatctttaacaccttcaag-gcta--tgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattgaagaggtgaagtactt |
217 |
Q |
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| T |
11860235 |
ataagatcttcgacaccttcaagtgctcgctacgcgtgttggatctacatgatttggggatcaagacggttccgagctctattgaggatgtgaagtactt |
11860334 |
T |
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| Q |
218 |
gaggtatctagatctttctcataacaacatagagaagcttcctagttgcat |
268 |
Q |
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| T |
11860335 |
gaggtatctagatctttcccataacaacatagagaagcttcctagttgcat |
11860385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 45 - 268
Target Start/End: Original strand, 11828024 - 11828250
Alignment:
| Q |
45 |
aggaccattcttttgccatacaacactgacaaccctcggcttcctgacgaggtacagatgacaacatcaacctgtgataagatctttaacaccttcaag- |
143 |
Q |
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| T |
11828024 |
aggaccattcttttgccatacaacattaacaaccctcgtcttccgcacgaggtaaagatgacaacgtcaacttgtgataagatcttcgacaccttcaagt |
11828123 |
T |
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| Q |
144 |
----gctatgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattgaagaggtgaagtacttgaggtatctagatctttctcat |
239 |
Q |
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| T |
11828124 |
actcgcta--cgcgtgttggatctacatgacttggggatcaagacagttccaagctctattgaggatgtgaagtacttgaggtatctagatctttcacat |
11828221 |
T |
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| Q |
240 |
aacaacatagagaagcttcctagttgcat |
268 |
Q |
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| T |
11828222 |
aacaacatggagaagcttcctagttgcat |
11828250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 42 - 272
Target Start/End: Complemental strand, 11902398 - 11902168
Alignment:
| Q |
42 |
ctgaggaccattcttttgccatacaacactgacaaccctcggcttcctgacgaggtacagatgacaacatcaacctgtgataagatctttaacaccttca |
141 |
Q |
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||||| |||||||||||||| |||| |||| |||||||||| ||||| ||||||| |||||||||||||||| || ||||||||||| |||||||||| |
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| T |
11902398 |
ctgagaaccattcttttgccgtacagcactaacaaccctcgccttccacacgaggtgaagatgacaacatcaacatgcgataagatcttcaacaccttca |
11902299 |
T |
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| Q |
142 |
aggctatgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattgaagaggtgaagtacttgaggtatctagatctttctcataa |
241 |
Q |
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| T |
11902298 |
agtccctacgtgtgctggatctacatgacttggggattaagatggttccaacatctattgaggaggtgaagtacttgaggtatctagatctttctcataa |
11902199 |
T |
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| Q |
242 |
caacatagagaagcttcctagttgcatcact |
272 |
Q |
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| T |
11902198 |
caacatagaaaagctacctagttccatcact |
11902168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 271
Target Start/End: Original strand, 11731801 - 11732033
Alignment:
| Q |
42 |
ctgaggaccattcttttgccatacaa---cactgacaaccctcggcttcctgacgaggtacagatgacaacatcaacctgtgataagatctttaacacct |
138 |
Q |
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| T |
11731801 |
ctgaggaccattttattgccatacaaaaacattaacaaccctcggcttccacacgaggtgaagatgacgacgccaacctgtgataagatcttcaacacct |
11731900 |
T |
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| Q |
139 |
tcaaggctatgcgcgtgttagatatgcatgacttggggatcaagacgattccgagctctattgaagaggtgaagtacttgaggtatctagatctttctca |
238 |
Q |
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| T |
11731901 |
tcaagtccatgcacgtgttggatctacatgacttggggatcaagattgtaccaacctctattgaggagatgaaatacttgaggtttctagatctatccca |
11732000 |
T |
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| Q |
239 |
taacaacatagagaagcttcctagttgcatcac |
271 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
11732001 |
caacaacatagagaagcttcctagttgcatcac |
11732033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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