View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_high_25 (Length: 250)
Name: NF9798_high_25
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 52240976 - 52241212
Alignment:
| Q |
1 |
tcgttaggactatcattttgagtggtaatgtcagtgacgatccattccttagcgctcgagcatttctcaagtttaatcttatcttttgtccttgaggttc |
100 |
Q |
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| T |
52240976 |
tcgttaggactatcattttgagtggtaatgtcagtgacgatccattccttagcgctcgagcatttctcaagtttaatcttatcttttgtccttgaggttc |
52241075 |
T |
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| Q |
101 |
tttctgtcctaaaaggcatcgccaaaggtaccacacctttacttgcccatttatatattgagaaatggaacttatcattactggtattattaggagaaac |
200 |
Q |
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| T |
52241076 |
tttctgtcctaaaaggcatcgccaaaggtaccacacctttacttgcccatttatatattgagaaatggaacttatcattactggtattattaggagaaac |
52241175 |
T |
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| Q |
201 |
ttcagtaatagatctgtcttttttcaaattgtttcct |
237 |
Q |
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| T |
52241176 |
ttcagtaatagatctgtcttttttcaaattgtttcct |
52241212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 52240935 - 52240982
Alignment:
| Q |
5 |
taggactatcattttgagtggtaatgtcagtgacgatccattccttag |
52 |
Q |
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|||||||||||||||| |||||||| ||| ||||||||||||| |||| |
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| T |
52240935 |
taggactatcattttgtgtggtaatctcactgacgatccattcgttag |
52240982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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