View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_high_27 (Length: 249)
Name: NF9798_high_27
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 10975822 - 10975603
Alignment:
| Q |
14 |
agacattggggtgagtttatcacaccagggatattgtttttgtatattgctggttggattggatgggttggtaggagttatttgattgctattcgtgatg |
113 |
Q |
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| T |
10975822 |
agacattggggtgagtttatcacaccagggatattgtttttgtatattgctggttggattggatgggttggtaggagttatttgattgctattcgtgatg |
10975723 |
T |
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| Q |
114 |
agaagaaacctactcagaaagagattattattgatgttcctcttgcttctagattggtttttagagggttcagttggcctattgctgcttatagagagtt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10975722 |
agaagaaacctactcagaaagagattattattgatgttcctcttgcttctagattggtttttagagggttcagttggcctattgctgcttatagagagtt |
10975623 |
T |
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| Q |
214 |
gctgaatggtgaactcattg |
233 |
Q |
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| T |
10975622 |
ggtgaatggtgaactcattg |
10975603 |
T |
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