View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_high_29 (Length: 242)
Name: NF9798_high_29
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_high_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 10976164 - 10975923
Alignment:
| Q |
1 |
agcacagaccaagaaaaaccaagcaacgatgtaaactcaaatctaaaagcattctcagcagcactagcactctcatcaatcctcatctcatcaccactcc |
100 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10976164 |
agcacaaaccaagaaaaaccaaccaacgatgtaaactcaaatctaaaagcattctcagcagcactagcactctcatcaatcctcatctcatcaccactcc |
10976065 |
T |
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| Q |
101 |
ccgctgtcgccgacatctccggtctaacaccatgcagagaatcaaaacaattcgccaaacgtgagaaacaatcaatcaaaaagcttgaatcatccctcaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10976064 |
ccgctgtcgccgacatctccggcctaacaccatgcagagaatcaaaacaattcgccaaacgtgagaaacaatcaatcaaaaagcttgaatcatcactcaa |
10975965 |
T |
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| Q |
201 |
gctttacgctccggacagtgctccagcgctggccataaaagc |
242 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10975964 |
gctttacgctccggacagcgctccagcgctggccataaaagc |
10975923 |
T |
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