View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_high_6 (Length: 414)
Name: NF9798_high_6
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_high_6 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0014 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 74981 - 74593
Alignment:
| Q |
16 |
aaaactgcatgaaactgatctttattaacacgcaagacactgttcagaaagtttctaagaaacctattcatgatttgaagcaagccaaaactactaaaac |
115 |
Q |
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| T |
74981 |
aaaactacatgaaattgatctttattaacacgtaagacactgttcaaaaagttgctaagaaacctactcctgatttgaagcaagccaaaactactaaaac |
74882 |
T |
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| Q |
116 |
agttgctttgagaggtaatcaacctgaaactagtgggaataagcacattccatctgagttaaccaatgatgtgcacaatcctaaagatggtgtgccaagt |
215 |
Q |
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| T |
74881 |
agttgctttgagtggcaagcaacctgaaactagtgggaataagcacattccatctgagttaaccaatgatgtgcacaatcctaaagatggagtgccaagt |
74782 |
T |
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| Q |
216 |
ccattgcaacttacacatgtacaccctgagcaagagggtgatgacaatgtggaaaaatcggttttcaatgagaatactaatcaaggaaggatctactatt |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
74781 |
ccattgcaacttacacatgtacaccctgagcaggagggtgatgacaatgtggaaaaattggttttcaatgagaatactaatgaaggaaggatctactatt |
74682 |
T |
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| Q |
316 |
gatgagtctgcacaattcatttaatacactcaacaatgaatgtacacttcttcatgaagaggcaattctagaagatcaggaaacctttg |
404 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
74681 |
gatgagtctacacaattcatttaatacactcaacaatgaatgtacacttcttcatgaagaggcaattctagaagatcaggaaacctttg |
74593 |
T |
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