View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_high_7 (Length: 403)
Name: NF9798_high_7
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 16643205 - 16642824
Alignment:
| Q |
1 |
aaatgaatcatcaaccacattttagataagatatagtttataaactatattttgataatgctgactaggttgagtttcacatgtacaacatatatattct |
100 |
Q |
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| T |
16643205 |
aaatgaatcatcaaccacattttagataagatatagtttatatactatattttgagaatgctgactaggttgagtttcacatgtacaacatatatattct |
16643106 |
T |
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| Q |
101 |
tcattgaagagcattacacgtagtgnnnnnnnnngataaaatgaaggaaatggaaaccaagaataattgggagggttggaaacatgattctctt------ |
194 |
Q |
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| T |
16643105 |
tcattgaagagcattacacatagtgttttgttttgataaaatgaaggaaagggaaaccaagtataattaggagggttggaaacatgattctcttaaaaaa |
16643006 |
T |
|
| Q |
195 |
nnnnnnnnntgtaaattgatttatgaagttgcttatttgaggggtagctcaatctcttttaaaagagagaaaatcataggttagtgttgtacccgtgcat |
294 |
Q |
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| T |
16643005 |
aaaaaaatatctaaattgatttatgaagttgcttatttgaggggtagctcaatcacttttaaaa-aaagagaatcataggttagtgtcgtacccgtg--- |
16642910 |
T |
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| Q |
295 |
ccatatacatgcacgagtatctcactaacaattattctatcgttgtcaatcgactataatatcatactaaagtagtgaatctccatacttatt |
387 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| | |||||||||| |||||||||| |
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| T |
16642909 |
-------catgcacgagtatctcactaacaattattctatcattgtcaatcaactataatatcatactatattagtgaatcttcatacttatt |
16642824 |
T |
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