View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_high_9 (Length: 347)
Name: NF9798_high_9
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 30941541 - 30941830
Alignment:
| Q |
21 |
ttagttatccattttggagtgctaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagatcaa |
120 |
Q |
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| T |
30941541 |
ttagttatccattttggagtgttaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagatcaa |
30941640 |
T |
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| Q |
121 |
atcacaaaagtttcacatcattgatataaatcaaacatctcgacttttgaggattgcacggttggatttatggagttatgatgatgatgctattgcttct |
220 |
Q |
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| T |
30941641 |
gtcacaaaagtttcacatcattgatataaatcaaacatctcgacttttgaggattgcccggttggatttatggagtaatgatgctgctactattgtttct |
30941740 |
T |
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| Q |
221 |
tgtccagagaaatacatcaatgtaaacttagatttggatttcttcaactacacttccaattatgaaaattataccctattgtatgagtgt |
310 |
Q |
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| T |
30941741 |
tgtcccaagaaatatatcattgtaaacctagatttggatttcttcaactacacttccaagtatgaaaagtatacactattgtacgagtgt |
30941830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 30983434 - 30983726
Alignment:
| Q |
18 |
atattagttatccattttggagtgctaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagat |
117 |
Q |
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| T |
30983434 |
atattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatggcaacttgactattgaaat |
30983533 |
T |
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| Q |
118 |
caaatcacaaaagtttcacatcattgatataaatcaaacatctcgacttttgaggattgcacggttggatttatggagttatgatgatgatgctattgct |
217 |
Q |
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| T |
30983534 |
taagtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatgattctgctactattgct |
30983633 |
T |
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| Q |
218 |
tcttgtccagagaaatacatcaatgtaaacttagatttggatttcttcaactacacttccaattatgaaaattataccctattgtatgagtgt |
310 |
Q |
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| T |
30983634 |
tcttgtcccaagaaatatatcaatgtaaccctagattcggaattcttcaattacacttccaattatgagaagtatacgctattatatgagtgt |
30983726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 30989598 - 30989890
Alignment:
| Q |
18 |
atattagttatccattttggagtgctaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagat |
117 |
Q |
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| T |
30989598 |
atattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatggcaacttgactattgaaat |
30989697 |
T |
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| Q |
118 |
caaatcacaaaagtttcacatcattgatataaatcaaacatctcgacttttgaggattgcacggttggatttatggagttatgatgatgatgctattgct |
217 |
Q |
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| T |
30989698 |
taagtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatgattctgctactattgct |
30989797 |
T |
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| Q |
218 |
tcttgtccagagaaatacatcaatgtaaacttagatttggatttcttcaactacacttccaattatgaaaattataccctattgtatgagtgt |
310 |
Q |
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| T |
30989798 |
tcttgtcccaagaaatatatcaatgtaaccctagattcggaattcttcaattacacttccaattatgagaagtatacgctattatatgagtgt |
30989890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 31009321 - 31009611
Alignment:
| Q |
20 |
attagttatccattttggagtgctaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagatca |
119 |
Q |
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| T |
31009321 |
attagttacccattttggagtattaacaaccatcaaaattattgtggtcatccaaacttcggagttgattgtgaacatggcaacttgactattgaaatca |
31009420 |
T |
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| Q |
120 |
aatcacaaaagtttcacatcattgatataaatcaaacatctcgacttttgaggattgcacggttggatttatggagttatgatgatgatgctattgcttc |
219 |
Q |
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| T |
31009421 |
agtcacaaaagtttcacatcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatgattctgctactattgcttc |
31009520 |
T |
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| Q |
220 |
ttgtccagagaaatacatcaatgtaaacttagatttggatttcttcaactacacttccaattatgaaaattataccctattgtatgagtgt |
310 |
Q |
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| T |
31009521 |
ttgtcccaagaaatatatcaatgtaaccctagattcggaattcttcaattacacttccaattatgagaagtatacgctattatatgagtgt |
31009611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 30976995 - 30977091
Alignment:
| Q |
18 |
atattagttatccattttggagtgctaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattga |
114 |
Q |
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| T |
30976995 |
atattagttacccattttggagtattaacaaccaacaaaattattgtggtcatccaaacttcaaacttgattgtgaacatggcaacttgactattga |
30977091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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