View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_low_12 (Length: 328)
Name: NF9798_low_12
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 2167171 - 2166868
Alignment:
| Q |
8 |
aagcagagagatataaaaggaatccatgtaaata----tacagtaacacttttgtcatgaaagataatacaacaaatcatttgaactataagaacnnnnn |
103 |
Q |
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| T |
2167171 |
aagcagtgagatataaaaggaatccatgtaaataaatatatagtaacacttttgtcatgaaagagaatacaacaaatcatttgaactataagaacaaaaa |
2167072 |
T |
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| Q |
104 |
nntgcataccaaagtttagtttcactaacatctcagttttgaggttgcagttgtatagagaccaaaacaa---tggagagcaatgaagtatcaagagttg |
200 |
Q |
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| T |
2167071 |
aatgcatatcaaaatttggtttcactaacatctcagttt-gagtttgtagttgta--gagaccaaaacaacaatggagagtaatgaagtatcaagagttg |
2166975 |
T |
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| Q |
201 |
atagcttaagaagagcaagtagttctaacatatggaggaacaatagcatgaatgttttctcaacgtctgaacgtgaagacgatgaagaagctcttaaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2166974 |
atagcttaagaagagcaagtagttctaacatatggaggaacaatagcatgaatgttttctcaacgtctgaacgtgaagacgatgaagaagctcttaaatg |
2166875 |
T |
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| Q |
301 |
ggctgct |
307 |
Q |
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||||||| |
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| T |
2166874 |
ggctgct |
2166868 |
T |
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