View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9798_low_13 (Length: 328)
Name: NF9798_low_13
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_13 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 89 - 313
Target Start/End: Original strand, 42956742 - 42956964
Alignment:
| Q |
89 |
ttcaaggagaccaatagttcagcttccgtgatggtaactcggtaatgcatccagctttatttcccaaataagaatagactcctagagtctctgaagcaca |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
42956742 |
ttcaaggagaccaatagttcagcttccgtgatggtaactcggtaatgcatccagctttatttcccaaataagaatagactcatagagtctctaaagcaca |
42956841 |
T |
|
| Q |
189 |
tatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaactactgtgtcagggttgggtccatccacaagactgagatgtac |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42956842 |
tatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaactactgtgtcagggttgggtccatccacaagac--agatgtac |
42956939 |
T |
|
| Q |
289 |
cgcgaattggaagttttgttctttg |
313 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42956940 |
cgcgaattggaagttttgttctttg |
42956964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 42956707 - 42956746
Alignment:
| Q |
10 |
gcagagagggcatctgccacaagcttgcaattagtttcaa |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42956707 |
gcagagagggcatctgccacaagcttgcaattagtttcaa |
42956746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 71 - 245
Target Start/End: Complemental strand, 7386201 - 7386026
Alignment:
| Q |
71 |
tatagctactttaatggcttcaaggagaccaatag-ttcagcttccgtgatggtaactcggtaatgcatccagctttatttcccaaataagaatagactc |
169 |
Q |
| |
|
||||||| ||| ||||| || ||||| ||||||| |||||||||| | ||||||||| ||||||| ||| || ||||||||||||| ||| ||| | |
|
|
| T |
7386201 |
tatagctgttttgatggcctctaggagtccaatagcttcagcttccatagtggtaactctataatgcaaccaatttgatttcccaaataaaaattgaccc |
7386102 |
T |
|
| Q |
170 |
ctagagtctctgaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaa |
245 |
Q |
| |
|
| |||||||| || |||||| |||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
7386101 |
attgagtctctaaaacacataccataacccatgagtgaattgttgttaaacaaggcacgatcaacattacatttaa |
7386026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 246
Target Start/End: Complemental strand, 49508297 - 49508224
Alignment:
| Q |
173 |
gagtctctgaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaac |
246 |
Q |
| |
|
|||||||||||||| | | |||| |||||||| || || ||||||||||| || || ||||||||| ||||||| |
|
|
| T |
49508297 |
gagtctctgaagcataaaccatagcccatgatagagttattgttaaacaacgcgcagtcaacattacatttaac |
49508224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 244
Target Start/End: Complemental strand, 5173274 - 5173177
Alignment:
| Q |
147 |
atttcccaaataagaatagactcctagagtctctgaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatattta |
244 |
Q |
| |
|
||||||||||||| ||| ||| | | || ||||| || || ||| |||||||||||| |||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
5173274 |
atttcccaaataaaaattgacccattgaatctctaaaacatataccataacccatgaatgaattgttgttaaacaaggcacagtcaacattacattta |
5173177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 246
Target Start/End: Original strand, 237015 - 237088
Alignment:
| Q |
173 |
gagtctctgaagcacatatcataacccatgattgaattgttgttaaacaaggcacaatcaacattatatttaac |
246 |
Q |
| |
|
|||||||||||||| | | |||| |||||||| || || ||||||||||| || || ||||||||| ||||||| |
|
|
| T |
237015 |
gagtctctgaagcataaaccatagcccatgatagagttattgttaaacaacgcgcagtcaacattacatttaac |
237088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University