View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9798_low_14 (Length: 326)

Name: NF9798_low_14
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9798_low_14
NF9798_low_14
[»] chr7 (3 HSPs)
chr7 (24-310)||(6629506-6629792)
chr7 (194-274)||(2392988-2393068)
chr7 (208-268)||(11918544-11918604)
[»] chr1 (5 HSPs)
chr1 (192-310)||(4650378-4650496)
chr1 (173-267)||(49087140-49087234)
chr1 (173-270)||(49086798-49086895)
chr1 (173-274)||(23600628-23600728)
chr1 (206-270)||(13798525-13798589)
[»] chr2 (6 HSPs)
chr2 (173-310)||(8941153-8941290)
chr2 (173-270)||(31067692-31067789)
chr2 (175-271)||(8163186-8163282)
chr2 (173-276)||(25867020-25867123)
chr2 (175-271)||(15324880-15324975)
chr2 (194-266)||(28645885-28645957)
[»] chr6 (5 HSPs)
chr6 (172-271)||(1103522-1103621)
chr6 (177-282)||(14450750-14450855)
chr6 (177-271)||(14448695-14448789)
chr6 (206-283)||(11189456-11189533)
chr6 (227-271)||(13553259-13553303)
[»] chr4 (4 HSPs)
chr4 (178-310)||(19564694-19564827)
chr4 (177-264)||(11865335-11865422)
chr4 (184-253)||(12380413-12380482)
chr4 (174-276)||(9234695-9234797)
[»] scaffold0070 (1 HSPs)
scaffold0070 (202-268)||(3539-3605)
[»] scaffold0135 (1 HSPs)
scaffold0135 (174-276)||(40560-40662)
[»] chr8 (1 HSPs)
chr8 (206-270)||(14155818-14155882)
[»] chr3 (1 HSPs)
chr3 (206-270)||(42243669-42243733)


Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 24 - 310
Target Start/End: Complemental strand, 6629792 - 6629506
Alignment:
Q  24 tcctttccttgtcatgttacannnnnnnnatctacttttaatatttaaagttgtcatgtaattgtgcagtaacttcatgcccttttaatcatttttaagc 123  Q
    |||||||| ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  6629792 tcctttccctgtcatgttacattttttttatctacttttaatatttaaagttgtcatgtaattgtgcagtaacttcatgctcttttaatcagttttaagc 6629693  T
Q  124 aaattgacatgcaaaggcatccttgtagcactataagttaaacctatgtttgaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6629692 aaattgacatgcaaaggcatccttgtagcactataagttaaacctatgtttgaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgc 6629593  T
Q  224 gaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaacaaaagataaaggttgaaattaaatgacacgagttattt 310  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6629592 ggaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaactaaagataaaggttgaaattaaatgacacgagttattt 6629506  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 2393068 - 2392988
Alignment:
Q  194 aaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaacaa 274  Q
    ||||| ||||| |||||||||| |||| |||| |||||||| |  | ||||| |||| |||||||||||||||||||||||    
T  2393068 aaagatgttgaacacgatgtcatgacaagcgagatgtcaagaaagaagtcaagacattgtgacaacacaaataacaaacaa 2392988  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 11918604 - 11918544
Alignment:
Q  208 cgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataac 268  Q
    |||||||| |||||  | |||||| | | ||||||||||||||||| ||||||||||||||    
T  11918604 cgatgtcaggacaccagtaatgtcgaatgcaatgtcaaaacatcgtaacaacacaaataac 11918544  T

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Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 192 - 310
Target Start/End: Complemental strand, 4650496 - 4650378
Alignment:
Q  192 taaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaacaaaagataaaggttgaaat 291  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||||||| | |||     
T  4650496 taaaagatgttgagcacgatgtcaagacacgcgaaatgtcgagtacaatgtcaagacatcgtgacaacacaaatagcaaactaaagataaaggctaaaag 4650397  T
Q  292 taaatgacacgagttattt 310  Q
    |||||||||| ||||||||    
T  4650396 taaatgacacaagttattt 4650378  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 267
Target Start/End: Complemental strand, 49087234 - 49087140
Alignment:
Q  173 ttgaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataa 267  Q
    |||||||||||||||  ||| ||||| |||||||||||||||| |||| |||||||||| || |  ||||||| |||||||| ||||| ||||||    
T  49087234 ttgaaattctggcacccagttaaagatgttgagcacgatgtcacgacaagcgaaatgtctagaaggatgtcaagacatcgtgccaacagaaataa 49087140  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 49086895 - 49086798
Alignment:
Q  173 ttgaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaa 270  Q
    |||||||||||||||  ||| ||||| |||||||||||||| | |||| |||||||||| || |  ||||||| |||||||| ||||| |||||||||    
T  49086895 ttgaaattctggcacccagttaaagatgttgagcacgatgtaacgacaagcgaaatgtctagaaagatgtcaagacatcgtgtcaacagaaataacaa 49086798  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 274
Target Start/End: Complemental strand, 23600728 - 23600628
Alignment:
Q  173 ttgaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaac 272  Q
    |||||||| |||||||||||||| || |||   ||||||||||||||| |||| |||| ||| |  ||||||| ||||||||| |||  | |||||||||    
T  23600728 ttgaaattttggcacgtagtaaa-gatgttatacacgatgtcaagacaagcgagatgttaagaaagatgtcaagacatcgtgataacctagataacaaac 23600630  T
Q  273 aa 274  Q
    ||    
T  23600629 aa 23600628  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 13798525 - 13798589
Alignment:
Q  206 cacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaa 270  Q
    ||||||||||||||| | |  |||||||| |  ||||||| ||||||||| ||||||||||||||    
T  13798525 cacgatgtcaagacaagtgtgatgtcaagaaagatgtcaagacatcgtgataacacaaataacaa 13798589  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 173 - 310
Target Start/End: Original strand, 8941153 - 8941290
Alignment:
Q  173 ttgaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaac 272  Q
    |||||||||| ||||| ||||||||| | ||||||||||||||||||||| | |||||| ||||||||||||| |||| ||||||| |||||||||||||    
T  8941153 ttgaaattctagcacgcagtaaaagatgctgagcacgatgtcaagacacgaggaatgtcgagtacaatgtcaagacattgtgacaatacaaataacaaac 8941252  T
Q  273 aaaagataaaggttgaaattaaatgacacgagttattt 310  Q
     ||||||||| | ||||| |||||  ||| ||||||||    
T  8941253 taaagataaaagctgaaagtaaattgcacaagttattt 8941290  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 31067789 - 31067692
Alignment:
Q  173 ttgaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaa 270  Q
    |||||||||||||||| ||||||||| ||||| ||||||||||||||||  | ||| || | |||||||||||||||||||||||||| |||||||||    
T  31067789 ttgaaattctggcacgcagtaaaagatgttgaacacgatgtcaagacactaggaatatcgaatacaatgtcaaaacatcgtgacaacataaataacaa 31067692  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 8163282 - 8163186
Alignment:
Q  175 gaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaa 271  Q
    ||||||||||||| |||||||||| ||| ||||||||||||||||||| |  ||||| || |||||||||| ||||| || ||||||||||||||||    
T  8163282 gaaattctggcacatagtaaaagatgtttagcacgatgtcaagacacgtggtatgtcgagcacaatgtcaagacatcctggcaacacaaataacaaa 8163186  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 173 - 276
Target Start/End: Original strand, 25867020 - 25867123
Alignment:
Q  173 ttgaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaac 272  Q
    |||||||| ||||||| ||||||||| |||||| ||||||| || ||||| | |||||| || | |||||||||||||| |||||||||||||||||||     
T  25867020 ttgaaattatggcacgcagtaaaagatgttgagtacgatgttaaaacacgaggaatgtcgagaataatgtcaaaacatcatgacaacacaaataacaaat 25867119  T
Q  273 aaaa 276  Q
    ||||    
T  25867120 aaaa 25867123  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 15324880 - 15324975
Alignment:
Q  175 gaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaa 271  Q
    ||||||||| |||| ||||||||| || |  ||||||||||||||||  |||||||||| | |||||| || ||| ||||||||||||| |||||||    
T  15324880 gaaattctgacacgcagtaaaagatgtagt-cacgatgtcaagacaccagaaatgtcaaatgcaatgttaagacaccgtgacaacacaattaacaaa 15324975  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 266
Target Start/End: Complemental strand, 28645957 - 28645885
Alignment:
Q  194 aaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaata 266  Q
    ||||| |||||| | ||||||||||||  | ||||||||||||| | || || | ||||||||||||||||||    
T  28645957 aaagatgttgagaatgatgtcaagacaaacaaaatgtcaagtacgaagttaagatatcgtgacaacacaaata 28645885  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 1103621 - 1103522
Alignment:
Q  172 tttgaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaa 271  Q
    |||||||||||  |||| | ||||||| ||| ||||||||||||||||||||  |||||| || |||||||||| |||||||||||||||||||||||||    
T  1103621 tttgaaattctatcacgcactaaaagatgttaagcacgatgtcaagacacgcacaatgtcgagcacaatgtcaagacatcgtgacaacacaaataacaaa 1103522  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 282
Target Start/End: Complemental strand, 14450855 - 14450750
Alignment:
Q  177 aattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaacaaaa 276  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||  || | ||| |||| ||||| |||||||||||||||||||  |||    
T  14450855 aattctgccacgtagtaaaagatgttgagcacgatgtcaaaacacgagaaatgttgagaataatatcaagacatcctgacaacacaaataacaaattaaa 14450756  T
Q  277 gataaa 282  Q
    ||||||    
T  14450755 gataaa 14450750  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 271
Target Start/End: Complemental strand, 14448789 - 14448695
Alignment:
Q  177 aattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaa 271  Q
    ||||||| |||||||||||||| |||||| |||||||||| ||||| |||||||  || |||||||||| ||||| |||||||||||||| ||||    
T  14448789 aattctgccacgtagtaaaagatgttgagtacgatgtcaaaacacgagaaatgttgagaacaatgtcaagacatcttgacaacacaaatagcaaa 14448695  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 283
Target Start/End: Complemental strand, 11189533 - 11189456
Alignment:
Q  206 cacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaacaaaagataaag 283  Q
    |||||||||||||||   | ||||||||| |  ||||| | |||||||||||||||| ||||||||| ||||||||||    
T  11189533 cacgatgtcaagacatttgtaatgtcaagaatgatgtcgagacatcgtgacaacacacataacaaactaaagataaag 11189456  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 13553259 - 13553303
Alignment:
Q  227 atgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaa 271  Q
    ||||||||||  |||||||||||| ||||||||||||||| ||||    
T  13553259 atgtcaagtaagatgtcaaaacattgtgacaacacaaatatcaaa 13553303  T

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Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 19564694 - 19564827
Alignment:
Q  178 attctggcacgtagtaaa-agaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaacaaaa 276  Q
    |||||||||||||| ||| |||  |||||||||||||||||||||||| ||||||||| |  ||||||| |||||| |||||||||||||||||   |||    
T  19564694 attctggcacgtaggaaagagattttgagcacgatgtcaagacacgcgtaatgtcaagaatgatgtcaagacatcgagacaacacaaataacaacttaaa 19564793  T
Q  277 gataaaggttgaaattaaatgacacgagttattt 310  Q
    ||||||||  |||| |||| | |||| |||||||    
T  19564794 gataaaggcagaaagtaaaaggcacgggttattt 19564827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 264
Target Start/End: Complemental strand, 11865422 - 11865335
Alignment:
Q  177 aattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaa 264  Q
    |||||| ||||  ||||||||| |||| |||| ||||||||||||||  |||||||||||  ||||||| ||||||||||||||||||    
T  11865422 aattctagcacacagtaaaagatgttgggcacaatgtcaagacacgcagaatgtcaagtaagatgtcaagacatcgtgacaacacaaa 11865335  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 253
Target Start/End: Original strand, 12380413 - 12380482
Alignment:
Q  184 gcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgt 253  Q
    ||||| ||||||||| ||||||||||||||||||||||| | ||| || || |||||||||| |||||||    
T  12380413 gcacgcagtaaaagatgttgagcacgatgtcaagacacgaggaatatcgagaacaatgtcaagacatcgt 12380482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 9234695 - 9234797
Alignment:
Q  174 tgaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaaca 273  Q
    ||||||||||||||  ||||||| | |||   ||| || | |||||| |||| |||| ||| | |||||||| |||| ||||||||||| ||||||||||    
T  9234695 tgaaattctggcactcagtaaaaaatgttatacacaatattaagacaagcgagatgttaagaataatgtcaagacattgtgacaacacagataacaaaca 9234794  T
Q  274 aaa 276  Q
    |||    
T  9234795 aaa 9234797  T

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Target: scaffold0070 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 3539 - 3605
Alignment:
Q  202 tgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataac 268  Q
    ||||||||||||||||||||||| |||||| || |||||||||| ||||||||||||||||||||||    
T  3539 tgagcacgatgtcaagacacgcggaatgtccagcacaatgtcaagacatcgtgacaacacaaataac 3605  T

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Target: scaffold0135 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 40560 - 40662
Alignment:
Q  174 tgaaattctggcacgtagtaaaagaagttgagcacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaaca 273  Q
    ||||||||||||||  ||||||| | |||   |||||||| |||||| |||| |||| ||| | |||||||| |||| ||||||||||| ||||||||||    
T  40560 tgaaattctggcactcagtaaaaaatgttatacacgatgttaagacaagcgagatgttaagaataatgtcaagacattgtgacaacacagataacaaaca 40659  T
Q  274 aaa 276  Q
    |||    
T  40660 aaa 40662  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 14155818 - 14155882
Alignment:
Q  206 cacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaa 270  Q
    ||||||||||||||| | |  |||||||| |  ||||||| ||||||||| ||||||||||||||    
T  14155818 cacgatgtcaagacaagtgtgatgtcaagaaagatgtcaagacatcgtgataacacaaataacaa 14155882  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 42243669 - 42243733
Alignment:
Q  206 cacgatgtcaagacacgcgaaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaa 270  Q
    ||||||||||||||| | |  |||||||| |  ||||||| ||||||||| ||||||||||||||    
T  42243669 cacgatgtcaagacaagtgtgatgtcaagaaagatgtcaagacatcgtgataacacaaataacaa 42243733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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