View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_low_17 (Length: 307)
Name: NF9798_low_17
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 29007800 - 29007510
Alignment:
| Q |
1 |
caaaataagaggtgggaacaatgtaaagtgtatttttcgagacttgaa-ttaaaatttgtaataacgaacggttcattggatatgtgatgattggcagtg |
99 |
Q |
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| T |
29007800 |
caaaataagaggtgggaacaatgtaaagtgtatttttcgagacttgaaattaaaatttgtaataacgaacggttcattggatatgtgatgattggcagtg |
29007701 |
T |
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| Q |
100 |
tttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007700 |
tttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaa |
29007601 |
T |
|
| Q |
200 |
cagtgatccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagt |
290 |
Q |
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| T |
29007600 |
cagtgatccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagt |
29007510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 2 - 290
Target Start/End: Original strand, 21409421 - 21409709
Alignment:
| Q |
2 |
aaaataagaggtgggaacaatgtaaagtgtatttttcgagact-tgaattaaaatttgtaataacgaacggttcattggatatgtgatgattggcagtgt |
100 |
Q |
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|||||||| || ||||||| |||||||||||||||||| | | |||||||||| |||||||| || | |||||||||||||||||||||| |||||| |
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| T |
21409421 |
aaaataagtggcaggaacaaagtaaagtgtatttttcgaatgtctaaattaaaattggtaataacaaatg-ttcattggatatgtgatgattgacagtgt |
21409519 |
T |
|
| Q |
101 |
ttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaac |
200 |
Q |
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| T |
21409520 |
ttacttacacaccgttgtacgacgtaattgaggtaaaccaacaagggtacaacacatgtacaatagcaaatgccatttcgacatacaactcaggagaaac |
21409619 |
T |
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| Q |
201 |
agtgatccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagt |
290 |
Q |
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| T |
21409620 |
agtgatccacgtcattgaatcaggaaaacgctacttcgtttgtggcagaatgggccattgccaacaaggcctgaaactcaaagtcaaagt |
21409709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 218
Target Start/End: Original strand, 21461710 - 21461926
Alignment:
| Q |
2 |
aaaataagaggtgggaacaatgtaaagtgtatttttcgagact-tgaattaaaatttgtaataacgaacggttcattggatatgtgatgattggcagtgt |
100 |
Q |
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|||||||| || ||||||| ||||||||||||||| || | | |||||||||| |||||||| || | |||||||||||||||||||||| ||| || |
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| T |
21461710 |
aaaataagtggcaggaacaaagtaaagtgtattttttgaatgtataaattaaaattagtaataacaaatg-ttcattggatatgtgatgattgacagcgt |
21461808 |
T |
|
| Q |
101 |
ttacttacacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaac |
200 |
Q |
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|||||||||||||||| ||| |||| || ||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||| ||||| ||||||||| |
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| T |
21461809 |
ttacttacacaccgttgtacaacgtaattgaggtaaaccaacaagggtacaacacatgtacaatagcaaacgccgtttcgacatacaactctggagaaat |
21461908 |
T |
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| Q |
201 |
agtgatccacctcactga |
218 |
Q |
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|||||||||||||||||| |
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| T |
21461909 |
agtgatccacctcactga |
21461926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 21465429 - 21465485
Alignment:
| Q |
234 |
cttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagt |
290 |
Q |
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||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||| |
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| T |
21465429 |
cttcgtttgtggcagaatgggccattgccaacaaggcctgaaactcaaagtcaaagt |
21465485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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