View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_low_18 (Length: 303)
Name: NF9798_low_18
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 29612911 - 29613192
Alignment:
| Q |
19 |
gttctgatccagaggttggtaatgtaggtcaaccagatgttgatgttggcaacgaaattagtcaggttattattgagtcatatccagattgccaaaaaga |
118 |
Q |
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| T |
29612911 |
gttctgatccagaggttggtaatgtaggtcaaccagatgttgatgttggcaacgaaattagtcaagttattattgagtcatatccagattgccaaaaaga |
29613010 |
T |
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| Q |
119 |
tgtatctagtgaaggtcaagatattcactgttcttcagattccataacagaggttgctagtggtggaggtgatc---------------tacatgaaaca |
203 |
Q |
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| T |
29613011 |
ggtatctagtgaaggtcaagatattcactgttcttcagattccataacagaggttgctagtgatggaggtgatctacatgtagacattatacatgaaaca |
29613110 |
T |
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| Q |
204 |
aattctataagtgttgtagcattgtaggggattgtttaatccatatatatatggacaatggaaatagcaagactggtatttg |
285 |
Q |
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| T |
29613111 |
aattctataagtgttgtagcattgtaagggattgtttaatccatatatatatggacaatggaaataacaagactggtatttg |
29613192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 192
Target Start/End: Original strand, 29525178 - 29525283
Alignment:
| Q |
84 |
gttattattgagtcatatccagattgccaaaaagatgtatctagtgaaggtcaagatattcactgttcttcagattccataacagaggttgctagtggtg |
183 |
Q |
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| T |
29525178 |
gttattattgattcatatctagataaccaacaagaggtatctagtgaaggtcaagttattgacag---ttcagttaccataccagaagttgctagttgtg |
29525274 |
T |
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| Q |
184 |
gaggtgatc |
192 |
Q |
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| T |
29525275 |
gaagtgatc |
29525283 |
T |
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