View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9798_low_20 (Length: 298)

Name: NF9798_low_20
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9798_low_20
NF9798_low_20
[»] chr6 (12 HSPs)
chr6 (1-281)||(8527382-8527662)
chr6 (1-281)||(8540827-8541107)
chr6 (9-281)||(8514510-8514782)
chr6 (3-198)||(5082943-5083138)
chr6 (1-198)||(8627521-8627718)
chr6 (13-77)||(8549041-8549105)
chr6 (13-77)||(8625226-8625290)
chr6 (153-195)||(8843236-8843278)
chr6 (13-77)||(8540262-8540326)
chr6 (13-80)||(8843351-8843418)
chr6 (232-281)||(8843150-8843199)
chr6 (245-281)||(8647455-8647491)
[»] chr8 (1 HSPs)
chr8 (3-198)||(4538825-4539020)
[»] scaffold0155 (1 HSPs)
scaffold0155 (3-198)||(34468-34660)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 8527662 - 8527382
Alignment:
Q  1 ttatgtttatgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactttctgtaatacaaacttactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  8527662 ttatgtttatgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactttctgaaagacaaacttactt 8527563  T
Q  101 gtgcatccgtaaggctagaagtgaaactatctgcatggttcaaaagatcaatatcacaacgataataatagtttgctaccgtatcattttcagcacttcg 200  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8527562 gtgcatccgtaaggctagaagtaacactatctgcatggttcaaaagatcaatatcacaacgataataatagtttgctaccgtatcattttcagcacttcg 8527463  T
Q  201 aaccaaattatgtatcagattaagtgtatcagacgaattatgattaagcacatcaattgtgtatcgtgcaaggtcgacaag 281  Q
    ||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8527462 aaccaaattatgtattaggttaagtgtgtcagacgaattattattaagcacatcaattgtgtatcgtgcaaggtcgacaag 8527382  T

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Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 8540827 - 8541107
Alignment:
Q  1 ttatgtttatgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactttctgtaatacaaacttactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  8540827 ttatgtttatgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactttctgaaagacaaacttactt 8540926  T
Q  101 gtgcatccgtaaggctagaagtgaaactatctgcatggttcaaaagatcaatatcacaacgataataatagtttgctaccgtatcattttcagcacttcg 200  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8540927 gtgcatccgtaaggctagaagtaacactatctgcatggttcaaaagatcaatatcacaacgataataatagtttgctaccgtatcattttcagcacttcg 8541026  T
Q  201 aaccaaattatgtatcagattaagtgtatcagacgaattatgattaagcacatcaattgtgtatcgtgcaaggtcgacaag 281  Q
    ||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8541027 aaccaaattatgtattaggttaagtgtgtcagacgaattattattaagcacatcaattgtgtatcgtgcaaggtcgacaag 8541107  T

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Target: chr6; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 8514782 - 8514510
Alignment:
Q  9 atgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactttctgtaatacaaacttacttgtgcatcc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  8514782 atgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactttatgaaatacaaacttatttgtgcatcc 8514683  T
Q  109 gtaaggctagaagtgaaactatctgcatggttcaaaagatcaatatcacaacgataataatagtttgctaccgtatcattttcagcacttcgaaccaaat 208  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||| ||||     
T  8514682 gtaaggctagaagtgacactatctccatggttcaaaagatcaatatcacaatgataataatagtttgctaccgtagaattttcagcactttgaatcaaac 8514583  T
Q  209 tatgtatcagattaagtgtatcagacgaattatgattaagcacatcaattgtgtatcgtgcaaggtcgacaag 281  Q
    |   ||| || |||||||| || || | ||||| |||||||||||||||||||||| |||||||||| |||||    
T  8514582 ttcttattaggttaagtgtgtcggaagtattatcattaagcacatcaattgtgtattgtgcaaggtcaacaag 8514510  T

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Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 5083138 - 5082943
Alignment:
Q  3 atgtttatgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactttctgtaatacaaacttacttgt 102  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |||||||||||  ||| |||    
T  5083138 atgtttatgaagactatcaatacattcaagaatgtatttcataatatcagctgactctttagccatggctgcataccttttgtaatacaaatctacctgt 5083039  T
Q  103 gcatccgtaaggctagaagtgaaactatctgcatggttcaaaagatcaatatcacaacgataataatagtttgctaccgtatcattttcagcactt 198  Q
    ||||||  ||   ||| | ||| |||| |  ||| | ||||||||||||    ||||||||||||||| |||||||||||||||||||||||||||    
T  5083038 gcatccccaaccttagtactgacactaccaccattgctcaaaagatcaagtgaacaacgataataataatttgctaccgtatcattttcagcactt 5082943  T

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Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 8627718 - 8627521
Alignment:
Q  1 ttatgtttatgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactttctgtaatacaaacttactt 100  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||| |||||| || ||||||||||   ||| |    
T  8627718 ttatgtttatgaagactatcattacattcaagaatgtatttcataacatcagctgactctttagccatggccggataccttttgtaatacaactctacct 8627619  T
Q  101 gtgcatccgtaaggctagaagtgaaactatctgcatggttcaaaagatcaatatcacaacgataataatagtttgctaccgtatcattttcagcactt 198  Q
    ||||||||  ||| || | | | | |||| |  ||| | |||||| |||||    |||||||||||||||||||||||||||||||||||||||||||    
T  8627618 gtgcatccccaagccttgtactcacactaccaccattgctcaaaatatcaagtgaacaacgataataatagtttgctaccgtatcattttcagcactt 8627521  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 8549105 - 8549041
Alignment:
Q  13 agactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggata 77  Q
    ||||||| | |||||||||||||||||||||| | |||||||| |||||||||||||||| ||||    
T  8549105 agactattactacattcaagaatgtatttcatgacatcagctgtatctttagccatggcttgata 8549041  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 8625226 - 8625290
Alignment:
Q  13 agactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggata 77  Q
    ||||||| | |||||||||||||||||||||| | |||||||| |||||||||||||||| ||||    
T  8625226 agactattactacattcaagaatgtatttcatgacatcagctgtatctttagccatggcttgata 8625290  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 8843278 - 8843236
Alignment:
Q  153 atcacaacgataataatagtttgctaccgtatcattttcagca 195  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  8843278 atcacaacgataataatagcttgctaccgtatcattttcagca 8843236  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 8540262 - 8540326
Alignment:
Q  13 agactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggata 77  Q
    ||||||| | |||||||||||| ||||||||| | |||||||| |||||||||||||||| ||||    
T  8540262 agactattactacattcaagaacgtatttcatgacatcagctgtatctttagccatggcttgata 8540326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 8843418 - 8843351
Alignment:
Q  13 agactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactt 80  Q
    ||||||| |||||| ||||||| |||||  ||||||||| |||| ||||| ||||| |||||||||||    
T  8843418 agactatgaatacaatcaagaaggtattgaataatatcatctgactctttcgccattgctggatactt 8843351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 8843199 - 8843150
Alignment:
Q  232 gacgaattatgattaagcacatcaattgtgtatcgtgcaaggtcgacaag 281  Q
    |||||||| | |||||||||||||||||||||| ||||||| || |||||    
T  8843199 gacgaattgtcattaagcacatcaattgtgtattgtgcaagatcaacaag 8843150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 8647455 - 8647491
Alignment:
Q  245 taagcacatcaattgtgtatcgtgcaaggtcgacaag 281  Q
    ||||||||||||||||||||  |||||||||||||||    
T  8647455 taagcacatcaattgtgtattctgcaaggtcgacaag 8647491  T

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Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 4539020 - 4538825
Alignment:
Q  3 atgtttatgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactttctgtaatacaaacttacttgt 102  Q
    |||||||| || |||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| || |||||||||||  ||| |||    
T  4539020 atgtttatttaaactatcaatacaatcaagaatgtatttcataatatcagccgactctttagccatggctggataccttttgtaatacaaatctacctgt 4538921  T
Q  103 gcatccgtaaggctagaagtgaaactatctgcatggttcaaaagatcaatatcacaacgataataatagtttgctaccgtatcattttcagcactt 198  Q
    ||||||  ||   ||| | ||| |||| |  ||| | |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4538920 gcatccccaaccttagtactgacactaccaccattgctcaaaaaatcattatcacaacgataataatagtttgctaccgtatcattttcagcactt 4538825  T

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Target: scaffold0155 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 34660 - 34468
Alignment:
Q  3 atgtttatgtagactatcaatacattcaagaatgtatttcataatatcagctgaatctttagccatggctggatactttctgtaatacaaacttacttgt 102  Q
    ||||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |   | |||| ||| ||||    
T  34660 atgtttatgcaggctatcaatacattcaagaaggtattgcataatatcagctgaatctttagccatggctgaatactttccgagctccaaatttaattgt 34561  T
Q  103 gcatccgtaaggctagaagtgaaactatctgcatggttcaaaagatcaatatcacaacgataataatagtttgctaccgtatcattttcagcactt 198  Q
     |||||  ||| |||||| ||| |||||   || |||| || | ||| |    ||||||||||||||| |||| ||||||||||||||||||||||    
T  34560 acatccccaagcctagaactgacactat---caaggttaaataaatctagtgaacaacgataataataatttgttaccgtatcattttcagcactt 34468  T

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