View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_low_21 (Length: 294)
Name: NF9798_low_21
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 43547658 - 43547931
Alignment:
| Q |
1 |
ttagaagaaatggaaactctctttgttgaggatgatgatgataataataacaataataatgagaaacagggtagtcacgataagggtgtggatgaaggag |
100 |
Q |
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| T |
43547658 |
ttagaagaaatggaaactctcttcgttgaggatgatgatgataataataacaataataatgagaaacagggtagtcacgataagggtgtggataaaggag |
43547757 |
T |
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| Q |
101 |
ttgtttaggggaagaaaatgtgttggtaagtttgctctttgtacatgttatataatcaatctatgtcagttactagcaattgcatatttgaatttagttc |
200 |
Q |
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| T |
43547758 |
ttgtttaggggaagaaa-tgtgttggtaagtatgctctttgtacatgttatataatcaatctatgtcagttactagcaattgcatatttgaatttagttc |
43547856 |
T |
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| Q |
201 |
atttatagctagaccaattgtatttgtggattgaagcatttacgaaattgttcttgaaactaccaatgttatgag |
275 |
Q |
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| T |
43547857 |
atttatagctagaccaattgtatttgtggattgaagcatttacgaaattgttcttgaaactaccaatgttatgag |
43547931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 121 - 275
Target Start/End: Complemental strand, 43550482 - 43550328
Alignment:
| Q |
121 |
tgttggtaagtttgctctttgtacatgttatataatcaatctatgtcagttactagcaattgcatatttgaatttagttcatttatagctagaccaattg |
220 |
Q |
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| T |
43550482 |
tgttcgtaagtttgctctttgtacatgttatataatcaatctatgtcagttactagcaattgcatatttgaatttagttcatttatagctagaccaattg |
43550383 |
T |
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| Q |
221 |
tatttgtggattgaagcatttacgaaattgttcttgaaactaccaatgttatgag |
275 |
Q |
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| T |
43550382 |
tatttgtggattgaagcatttacgaaattgttcttgaaactaccaatgttatgag |
43550328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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