View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_low_23 (Length: 273)
Name: NF9798_low_23
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 18029774 - 18029520
Alignment:
| Q |
9 |
agcataggacactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttgactgttacgtgctgaatctctattacattctattc |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
18029774 |
agcaaaggacactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttggctgttacgtgctgaatctctattacattctattc |
18029675 |
T |
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| Q |
109 |
ctggggtaaatcctgtaccctcttttatagcctctgagatgttttctatgctgtaaaattcatcatttggttcaatccctgaaattcattcccattaaat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18029674 |
ctggggtaaatcctgtaccctcttttatagcctctgagatgttttctatgctgtaaaattcatcatttggttcaatccctgaaattcattcccatcaaat |
18029575 |
T |
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| Q |
209 |
gattagaaactttgcgaatatatatgnnnnnnngtgtcctgcatggatgatgtcc |
263 |
Q |
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| T |
18029574 |
gattagaaactttgcgaatatatatgtttttttgtgtcctgcatgtatgatgtcc |
18029520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 18035788 - 18035585
Alignment:
| Q |
18 |
cactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttgactgttacgtgctgaatctctattacattctattcctggggtaa |
117 |
Q |
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||||||||||| |||||||||||| ||||| |||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||| | | |
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| T |
18035788 |
cactcaatgaattttgacccagaaatgtccgcacacatgtaaacttgataaagctggctgtttcgtgctgaatctctattacactctattcctggtgaat |
18035689 |
T |
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| Q |
118 |
atcctgtaccctcttttatagcctctgagatgttttctatgctgtaaaattcatcatttggttcaatccctgaaattcattcccattaaatgattagaaa |
217 |
Q |
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| T |
18035688 |
accctgtagcctgttgtatagcatctaaaatattacctgtgttgtaaaatttgttatctggttcaatacctgaaattcaatgcaattaaatgattagaaa |
18035589 |
T |
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| Q |
218 |
cttt |
221 |
Q |
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|||| |
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| T |
18035588 |
cttt |
18035585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 18048111 - 18048016
Alignment:
| Q |
18 |
cactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttgactgttacgtgctgaatctctattacattctattcctggg |
113 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||| || ||| ||||||||||||| ||||||||||| |
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| T |
18048111 |
cactcaatgaaatttgacccagaagtatccacacacatgtaaacttttaaaagctgacttttaagtcctggatctctattacatactattcctggg |
18048016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 18053027 - 18052842
Alignment:
| Q |
13 |
taggacactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttgactgttacgtgctgaatctctattacattctattcctgg |
112 |
Q |
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|||| |||| ||||||||||||||||||| | ||||| ||||||||||||| ||| ||| ||||| ||||||||||||||||||||| |||||||| |
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| T |
18053027 |
tagggcactgaatgaaatttgacccagaaatatccacgcacatgtaaacttttaaaacctgatcgttacctgctgaatctctattacattccattcctgg |
18052928 |
T |
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| Q |
113 |
ggtaaatcctgtaccctcttttatagcctctgagatgttttctatgctgtaaaattcatcatttggttcaatccctgaaattcatt |
198 |
Q |
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| ||| |||||| | |||| |||| | | |||| ||||| |||||||| |||||||||||||| ||||||||||||| |
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| T |
18052927 |
gagaaaccctgtagcgtcttctataatgcttaaagggtttcctatgtcgtaaaattgatcatttggttcaaatcctgaaattcatt |
18052842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 18000169 - 18000104
Alignment:
| Q |
14 |
aggacactcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttgactgtt |
79 |
Q |
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|||||| |||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
18000169 |
aggacagtcaatgaagtttgatccagaagtgtccacacacaaataaacttgatatagttgactgtt |
18000104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 18007190 - 18007132
Alignment:
| Q |
21 |
tcaatgaaatttgacccagaagtgtccacacacatgtaaacttgataaagttgactgtt |
79 |
Q |
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|||||||| | ||| ||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
18007190 |
tcaatgaagtctgatccagaagtgtccacacacaagtaaacttgataaagttggctgtt |
18007132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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