View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9798_low_24 (Length: 271)

Name: NF9798_low_24
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9798_low_24
NF9798_low_24
[»] chr3 (4 HSPs)
chr3 (1-255)||(2620917-2621171)
chr3 (1-116)||(36549044-36549159)
chr3 (81-121)||(29094277-29094317)
chr3 (69-141)||(44240047-44240119)
[»] chr5 (7 HSPs)
chr5 (71-127)||(912995-913051)
chr5 (94-129)||(6738533-6738568)
chr5 (69-128)||(16270816-16270875)
chr5 (71-121)||(7554668-7554718)
chr5 (68-129)||(26516181-26516242)
chr5 (68-121)||(28981889-28981942)
chr5 (62-126)||(27104543-27104607)
[»] chr7 (5 HSPs)
chr7 (171-234)||(44821949-44822012)
chr7 (69-122)||(24545675-24545728)
chr7 (68-120)||(753339-753391)
chr7 (68-128)||(22388031-22388091)
chr7 (64-128)||(46281330-46281394)
[»] chr6 (3 HSPs)
chr6 (68-121)||(14340937-14340990)
chr6 (68-121)||(4247218-4247271)
chr6 (92-132)||(1497887-1497927)
[»] chr8 (6 HSPs)
chr8 (72-127)||(34563137-34563192)
chr8 (82-120)||(29206095-29206133)
chr8 (88-129)||(8578525-8578566)
chr8 (69-121)||(5226486-5226538)
chr8 (72-120)||(6950223-6950271)
chr8 (65-129)||(12972736-12972800)
[»] chr1 (1 HSPs)
chr1 (68-127)||(14128599-14128658)
[»] scaffold0085 (1 HSPs)
scaffold0085 (63-121)||(26175-26233)
[»] chr4 (3 HSPs)
chr4 (68-129)||(24193468-24193529)
chr4 (63-115)||(21043354-21043406)
chr4 (65-129)||(46053580-46053644)
[»] chr2 (1 HSPs)
chr2 (72-129)||(2400043-2400100)
[»] scaffold0091 (1 HSPs)
scaffold0091 (69-121)||(5903-5955)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 2621171 - 2620917
Alignment:
Q  1 gtgtgttgaaaattacactgaaatcaaatcagcaccattgatattttaagaagacattgaagccctttttggataaataacttaatgaaatgcttattgc 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2621171 gtgtgttgaaaattatactgaaatcaaatcagcaccattgatattttaagaagacattgaagccctttttggataaacaacttaatgaaatgcttattgc 2621072  T
Q  101 ataaacacttatcatataagtacttatgtttatgctgtttaaatacaaaataaataaagtcattgttttcttgtataagttacgagctgttttcacaagc 200  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621071 ataaacacttataatataagtacttatgtttatgctatttaaatacaaaataaataaagtcattgttttcttgtataagttacgagctgttttcacaagc 2620972  T
Q  201 tattctgtacagcttatgaaaatacgttgaaaacggcttagagacacgtcataag 255  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  2620971 tattctgtacagcttatgaaaataagttgaaaatggcttagagacacgtcataag 2620917  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 36549159 - 36549044
Alignment:
Q  1 gtgtgttgaaaattacactgaaatcaaatcagcaccattgatattttaagaagacattgaagccctttttggataaataacttaatgaaatgcttattgc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| |||| |||||| |||||| |||||||  || |||| || ||    
T  36549159 gtgtgttgaaaattacactgaaattaaatcagcaccattgatattatgagaagacattcaagctcttttttgataaacaacttaactaattgctaatagc 36549060  T
Q  101 ataaacacttatcata 116  Q
    ||||| ||||||||||    
T  36549059 ataaatacttatcata 36549044  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 29094277 - 29094317
Alignment:
Q  81 cttaatgaaatgcttattgcataaacacttatcatataagt 121  Q
    |||||| ||| |||||| |||||||||||||||||||||||    
T  29094277 cttaattaaacgcttatagcataaacacttatcatataagt 29094317  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 44240047 - 44240119
Alignment:
Q  69 ttggataaataacttaatgaaatgcttattgcataaacacttatcatataagtacttatgtttatgctgttta 141  Q
    ||||||||| |||||||  || ||||||| |||||| || ||||||||||||| ||||| |||| ||| ||||    
T  44240047 ttggataaacaacttaagtaagtgcttatagcataatcatttatcatataagtgcttatctttaagctattta 44240119  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 913051 - 912995
Alignment:
Q  71 ggataaataacttaatgaaatgcttattgcataaacacttatcatataagtacttat 127  Q
    ||||||| |||||||| ||||||||||   |||||||||||||||||||||||||||    
T  913051 ggataaacaacttaattaaatgcttatactataaacacttatcatataagtacttat 912995  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 129
Target Start/End: Complemental strand, 6738568 - 6738533
Alignment:
Q  94 ttattgcataaacacttatcatataagtacttatgt 129  Q
    |||| |||||||||||||||||||||||||||||||    
T  6738568 ttatagcataaacacttatcatataagtacttatgt 6738533  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 16270816 - 16270875
Alignment:
Q  69 ttggataaataacttaatgaaatgcttattgcataaacacttatcatataagtacttatg 128  Q
    ||||||||||| |||||| |||  ||| |  |||||||||||||||||||||||||||||    
T  16270816 ttggataaatagcttaatcaaactcttgtaacataaacacttatcatataagtacttatg 16270875  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 7554668 - 7554718
Alignment:
Q  71 ggataaataacttaatgaaatgcttattgcataaacacttatcatataagt 121  Q
    ||||||| |||||||| |||||| ||| ||||||||| |||||||||||||    
T  7554668 ggataaacaacttaatcaaatgcgtatagcataaacatttatcatataagt 7554718  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 26516181 - 26516242
Alignment:
Q  68 tttggataaataacttaatgaaatgcttattgcataaacacttatcatataagtacttatgt 129  Q
    |||||||||| |||||||| ||  |||||| |||||| | |||||||||||||| |||||||    
T  26516181 tttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgt 26516242  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 28981889 - 28981942
Alignment:
Q  68 tttggataaataacttaatgaaatgcttattgcataaacacttatcatataagt 121  Q
    ||||||||| ||||||||| || ||||||| ||||||||  |||||||||||||    
T  28981889 tttggataagtaacttaattaattgcttatagcataaacgtttatcatataagt 28981942  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 27104607 - 27104543
Alignment:
Q  62 gccctttttggataaataacttaatgaaatgcttattgcataaacacttatcatataagtactta 126  Q
    ||||| |||||| ||| |||| |||  || |||||| ||||||||||||||||||||||| ||||    
T  27104607 gccctgtttggaaaaacaactcaatttaacgcttatagcataaacacttatcatataagtgctta 27104543  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 44821949 - 44822012
Alignment:
Q  171 ttgtataagttacgagctgttttcacaagctattctgtacagcttatgaaaatacgttgaaaac 234  Q
    ||||||||||||  ||||||||||| ||||||||||| | | |||||||||||| |||||||||    
T  44821949 ttgtataagttataagctgttttcataagctattctggagaacttatgaaaataagttgaaaac 44822012  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 24545675 - 24545728
Alignment:
Q  69 ttggataaataacttaatgaaatgcttattgcataaacacttatcatataagta 122  Q
    ||||||||| |||||||| ||  | |||||| ||||||||||||||||||||||    
T  24545675 ttggataaacaacttaattaagcggttattggataaacacttatcatataagta 24545728  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 753391 - 753339
Alignment:
Q  68 tttggataaataacttaatgaaatgcttattgcataaacacttatcatataag 120  Q
    |||||||||| |||||||| || || |||| ||||||||| ||||||||||||    
T  753391 tttggataaacaacttaattaagtgtttatagcataaacatttatcatataag 753339  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 22388091 - 22388031
Alignment:
Q  68 tttggataaataacttaatgaaatgcttattgcataaacacttatcatataagtacttatg 128  Q
    |||||||||| |||||||| ||  ||||||  |||||||||||||||| ||||| ||||||    
T  22388091 tttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatg 22388031  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 46281394 - 46281330
Alignment:
Q  64 cctttttggataaataacttaatgaaatgcttattgcataaacacttatcatataagtacttatg 128  Q
    |||||||||||||| |||| ||| || ||||||| |||||| | ||| |||||||||| ||||||    
T  46281394 cctttttggataaacaactcaattaactgcttatagcataaccgcttttcatataagtgcttatg 46281330  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 14340990 - 14340937
Alignment:
Q  68 tttggataaataacttaatgaaatgcttattgcataaacacttatcatataagt 121  Q
    |||||||||| |||||||| || |||||||  ||||||||||||||||||||||    
T  14340990 tttggataaacaacttaattaagtgcttataacataaacacttatcatataagt 14340937  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 4247271 - 4247218
Alignment:
Q  68 tttggataaataacttaatgaaatgcttattgcataaacacttatcatataagt 121  Q
    |||||||||| |||||||| || ||||||| ||||||  |||||||||||||||    
T  4247271 tttggataaacaacttaattaagtgcttatagcataagtacttatcatataagt 4247218  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 1497887 - 1497927
Alignment:
Q  92 gcttattgcataaacacttatcatataagtacttatgttta 132  Q
    |||||| ||||||||||||||||| ||||| ||||||||||    
T  1497887 gcttatagcataaacacttatcatttaagtgcttatgttta 1497927  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 34563137 - 34563192
Alignment:
Q  72 gataaataacttaatgaaatgcttattgcataaacacttatcatataagtacttat 127  Q
    |||||| |||||||| ||| |||||| ||||||||| ||||||||||||| |||||    
T  34563137 gataaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttat 34563192  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 29206095 - 29206133
Alignment:
Q  82 ttaatgaaatgcttattgcataaacacttatcatataag 120  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  29206095 ttaatgaaatgcttattgcatatacacttaacatataag 29206133  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 8578525 - 8578566
Alignment:
Q  88 aaatgcttattgcataaacacttatcatataagtacttatgt 129  Q
    |||||||||| |||||| |||||||||||||||| |||||||    
T  8578525 aaatgcttatagcataagcacttatcatataagtgcttatgt 8578566  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 5226486 - 5226538
Alignment:
Q  69 ttggataaataacttaatgaaatgcttattgcataaacacttatcatataagt 121  Q
    ||||||||| |||||||| || || |||| ||||||||| |||||||||||||    
T  5226486 ttggataaacaacttaatcaactgtttatagcataaacatttatcatataagt 5226538  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 6950223 - 6950271
Alignment:
Q  72 gataaataacttaatgaaatgcttattgcataaacacttatcatataag 120  Q
    |||||| |||||||| || ||||||| |||||||| |||||||||||||    
T  6950223 gataaacaacttaattaagtgcttatagcataaacgcttatcatataag 6950271  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 12972736 - 12972800
Alignment:
Q  65 ctttttggataaataacttaatgaaatgcttattgcataaacacttatcatataagtacttatgt 129  Q
    ||||||||| ||| |||||||| ||  |||||| |||||| || ||||||||||||| |||||||    
T  12972736 ctttttggacaaacaacttaattaagcgcttatagcataagcatttatcatataagtgcttatgt 12972800  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 14128658 - 14128599
Alignment:
Q  68 tttggataaataacttaatgaaatgcttattgcataaacacttatcatataagtacttat 127  Q
    |||||||||| |||||||  |||||||||| | ||||| ||||||||||||||| |||||    
T  14128658 tttggataaacaacttaaataaatgcttatagtataaagacttatcatataagtgcttat 14128599  T

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Target: scaffold0085 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 26233 - 26175
Alignment:
Q  63 ccctttttggataaataacttaatgaaatgcttattgcataaacacttatcatataagt 121  Q
    |||| |||||||||| | |||||| || ||||||| |||||| ||||||||||||||||    
T  26233 ccctctttggataaacaccttaattaagtgcttatagcataagcacttatcatataagt 26175  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 24193468 - 24193529
Alignment:
Q  68 tttggataaataacttaatgaaatgcttattgcataaacacttatcatataagtacttatgt 129  Q
    |||||||||| ||||||||  |   ||||| |||||||| ||||||||||||||||||||||    
T  24193468 tttggataaacaacttaattgagcacttatagcataaacgcttatcatataagtacttatgt 24193529  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 21043406 - 21043354
Alignment:
Q  63 ccctttttggataaataacttaatgaaatgcttattgcataaacacttatcat 115  Q
    |||||||||| |||| ||||||||||| ||||||| ||||| || ||||||||    
T  21043406 ccctttttgggtaaacaacttaatgaagtgcttatagcatagacgcttatcat 21043354  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 46053580 - 46053644
Alignment:
Q  65 ctttttggataaataacttaatgaaatgcttattgcataaacacttatcatataagtacttatgt 129  Q
    ||||||||||||| | |||||| ||  |||||| |||| |  |||||||||||||||||||||||    
T  46053580 ctttttggataaacagcttaattaagcgcttatagcatgagtacttatcatataagtacttatgt 46053644  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 2400043 - 2400100
Alignment:
Q  72 gataaataacttaatgaaatgcttattgcataaacacttatcatataagtacttatgt 129  Q
    |||||| | |||||| ||||| |||| ||||||||| ||||||||||||| |||||||    
T  2400043 gataaacaccttaattaaatgtttatggcataaacaattatcatataagtgcttatgt 2400100  T

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Target: scaffold0091 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 5903 - 5955
Alignment:
Q  69 ttggataaataacttaatgaaatgcttattgcataaacacttatcatataagt 121  Q
    ||||||||| |||||||| || || |||| ||||||||| |||||||||||||    
T  5903 ttggataaacaacttaatcaactgtttatagcataaacatttatcatataagt 5955  T

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