View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_low_28 (Length: 250)
Name: NF9798_low_28
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_28 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2621192 - 2621428
Alignment:
| Q |
1 |
ttttggatggctgttacgatgagattcattcttggaggtttaaatggtttgcttggaccaatgaaggtatcacccaaaacaatttatattaaatgtttgg |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2621192 |
ttttggatggctgttacgatgagattcgttcttggaggtttaaatggtttgcttggaccaatgaaggtatcactcaaaacaatttatattaaatgtttgg |
2621291 |
T |
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| Q |
101 |
atttgtatacttgaatatctcaaattatctatataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttcgagaagaatacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2621292 |
atttgtatacttgaatatctcaaattatctatataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttagagaagaatacc |
2621391 |
T |
|
| Q |
201 |
aagctttaggacaatcaactgtaagtctcacaaacct |
237 |
Q |
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| T |
2621392 |
aagctttaggacaatcaactgtaagtctcacaaacct |
2621428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 32 - 199
Target Start/End: Original strand, 36549203 - 36549370
Alignment:
| Q |
32 |
ttggaggtttaaatggtttgcttggaccaatgaaggtatcacccaaaacaatttatattaaatgtttggatttgtatacttgaatatctcaaattatcta |
131 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||| ||||||| | |||| ||||||||||| || |||| ||||||||||| || |||| | |
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| T |
36549203 |
ttggaggtttaaatggtttgcttggactaatgaatgtatcactcaaaacactctatactaaatgtttggcttagtattcttgaatatcttaatttatttt |
36549302 |
T |
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| Q |
132 |
tataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttcgagaagaatac |
199 |
Q |
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| T |
36549303 |
tatagtttgtttatcataaccttcttcattaataggcttattcttctaaaatctgtagagaagaatac |
36549370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 2606570 - 2606638
Alignment:
| Q |
1 |
ttttggatggctgttacgatgagattcattcttggaggtttaaatggtttgcttggaccaatgaaggta |
69 |
Q |
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| T |
2606570 |
ttttggatggctgttacaacgcggttttttcttggatgtttaaatggtttgcttggaccaatgaaggta |
2606638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 101 - 237
Target Start/End: Original strand, 9324872 - 9325006
Alignment:
| Q |
101 |
atttgtatacttgaatatctcaaattatctatataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttcgagaagaatacc |
200 |
Q |
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| T |
9324872 |
atttgaatacttgaatatctcaatttatttttataatttgtttatcgtaacctcctacattaataggcttattatcttgaaatttgtagagaagaatgcc |
9324971 |
T |
|
| Q |
201 |
aagctttaggacaatcaactgtaagtctcacaaacct |
237 |
Q |
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| T |
9324972 |
aagctttaggacaatcaactctaa--ctcacaaacct |
9325006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 101 - 237
Target Start/End: Complemental strand, 113057 - 112927
Alignment:
| Q |
101 |
atttgtatacttgaatatctcaaattatctatataatttgtttattataacctccttcgttaataggcttattcttctgaaatttttcgagaagaatacc |
200 |
Q |
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||||| ||||||||||||||||| |||| | ||||||||||||| |||||| | |||||||||||||| || |||||||||| ||||||||| || |
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| T |
113057 |
atttgaatacttgaatatctcaatttatttttataatttgttta------cctcctacattaataggcttattattttgaaatttttagagaagaatgcc |
112964 |
T |
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| Q |
201 |
aagctttaggacaatcaactgtaagtctcacaaacct |
237 |
Q |
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| T |
112963 |
aagctttaggacaatcaactctaactcacacaaacct |
112927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 26370747 - 26370707
Alignment:
| Q |
29 |
ttcttggaggtttaaatggtttgcttggaccaatgaaggta |
69 |
Q |
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| T |
26370747 |
ttcttggaagtttaaatggtttgcttggaccaatgaaggta |
26370707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 26370608 - 26370559
Alignment:
| Q |
176 |
tctgaaatttttcgagaagaataccaagctttaggacaatcaactgtaag |
225 |
Q |
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| T |
26370608 |
tctgaaatttttcgagaagaaaagcaagcttttggactctcaactgtaag |
26370559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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