View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_low_33 (Length: 241)
Name: NF9798_low_33
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 3246306 - 3246092
Alignment:
| Q |
11 |
ggtgttgttaaattagcataataaactcaaaattttaatatatcttatatcaaccaacaattttaatgttagaaaaagcaaagtacaaaccagcgttgtc |
110 |
Q |
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| T |
3246306 |
ggtgttgttaaattagcataataaactcaaaattttaatatatcctatatcaaccaacaattttaatgttagaaaaagcaaagtacaaaccagcgttgtc |
3246207 |
T |
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| Q |
111 |
ttggacaaaattagttgcaaaagcagtggaagcaagggaatgcggtcgtgtatggcgaggaagattatcattttctttgtcataatgggaatcaaatgca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3246206 |
ttggacaaaattagttgcaaaagcagtggaagcaagggaatgcggtcgtgtatggcgaggaagattatcattttctttgtcataatgggaatcaaatgca |
3246107 |
T |
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| Q |
211 |
gaaacagacatagat |
225 |
Q |
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||||||||||||||| |
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| T |
3246106 |
gaaacagacatagat |
3246092 |
T |
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