View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9798_low_36 (Length: 239)
Name: NF9798_low_36
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 10858964 - 10859174
Alignment:
| Q |
12 |
caaaggaacaattttggagagttttgcatctcatgaaggtgatgcatcggatgaggttgaaaagataatatttgaggagctccaggctttgtatcttaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10858964 |
caaaggaacaattttggagagttttgcatctcatgaagttgatgcatcggatgaggttgaaaagataatatttgaggagctccaggctttgtatcttaaa |
10859063 |
T |
|
| Q |
112 |
gatttacatgaactcaagtgcttttattcagggaattttactctgtgttttccatccttggagcacgtgtttgtaatcaactgtcacaagatggaaactt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10859064 |
gatttacatgaactcaagtgcttttattcagggaattttactctgtgttttccatccttggagcacgtgtttgtaatcaactgtcacaaaatggaaactt |
10859163 |
T |
|
| Q |
212 |
tctgtccaggt |
222 |
Q |
| |
|
||||||||||| |
|
|
| T |
10859164 |
tctgtccaggt |
10859174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University