View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_low_38 (Length: 228)
Name: NF9798_low_38
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_38 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 11019771 - 11019992
Alignment:
| Q |
7 |
caatattgtatgagaatatcagtattagtaacaccacaacaaaggttaaggattgcatcttttgttttccgatataataacaagtatccattcatatagg |
106 |
Q |
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| T |
11019771 |
caatattgtacgagaatatcagtattagtaacaccacaacaaaggttaaggattgcattttttgttttccgatataataacaagtatccattcatatagg |
11019870 |
T |
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| Q |
107 |
gacggtgtcaggaattgaacttatagagggaccggcattaaaagtgtaatttagtaaagaataaattaattttcaaatgcataacttatataaaaaacta |
206 |
Q |
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| T |
11019871 |
gacggtgtcaggaattgaacttatagagggaccggcattaaaagtgtaatttagtaaaaaataaattaattttcaaatgcataacttatataaaaaacta |
11019970 |
T |
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| Q |
207 |
gtaaactatatgtgatatattc |
228 |
Q |
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| T |
11019971 |
gtaaactatatgtgatatattc |
11019992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 11009742 - 11009810
Alignment:
| Q |
11 |
attgtatgagaatatcagtattagtaacaccacaacaaaggttaaggattgcatcttttgttttccgat |
79 |
Q |
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| T |
11009742 |
attgtacgagaatatcagtattagtaacaccacaacaagggttaaggatggcatttttggttttccgat |
11009810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 11035153 - 11035213
Alignment:
| Q |
18 |
gagaatatcagtattagtaacaccacaacaaaggttaaggattgcatcttttgttttccga |
78 |
Q |
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| T |
11035153 |
gagaatatcagtattagtaacagcacaacaaaggttaaggaagacattttttgttttccga |
11035213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 36651148 - 36651191
Alignment:
| Q |
147 |
aaagtgtaatttagtaaagaataaattaattttcaaatgcataac |
191 |
Q |
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| T |
36651148 |
aaagtataatttagtaaagaa-aaataaattttcaaatgcataac |
36651191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 33248050 - 33248001
Alignment:
| Q |
154 |
aatttagtaaagaataaattaattttcaaatgcataacttatataaaaaa |
203 |
Q |
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| T |
33248050 |
aatttagtgaagaaaaaataaattttcaaatgcttaacttatataaaaaa |
33248001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 36145245 - 36145185
Alignment:
| Q |
144 |
ttaaaagtgtaatttagtaaagaataa-attaattttcaaatgcataacttatataaaaaa |
203 |
Q |
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| T |
36145245 |
ttaaaagtgtaatttagtaaagaaaaatataaacttttaaatgcagaacttataaaaaaaa |
36145185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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