View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_low_39 (Length: 216)
Name: NF9798_low_39
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 26743750 - 26743858
Alignment:
| Q |
7 |
agtagcaaagggcattgtattctttatagttaaatagaagaagcaaagaataaacgtaacaggaaatattcttgtctcttcggtcttacttgctttactt |
106 |
Q |
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| T |
26743750 |
agtaccaaagggcattgtattctttatagttaaatagaagaagcaaagaataaacgtaacaggaaatattcttgtctcttcggtcttacttgctttactt |
26743849 |
T |
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| Q |
107 |
ctaaacata |
115 |
Q |
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||||||||| |
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| T |
26743850 |
ctaaacata |
26743858 |
T |
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Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 26746262 - 26746330
Alignment:
| Q |
131 |
atatgaagattaaattcctctatatgttcgaaacaatcatataaacgtcaatagaaaccaataataagc |
199 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26746262 |
atatgaagattaaattcctttatatgttcgaaacaatcatataaacggcaatagaaaccaataataagc |
26746330 |
T |
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