View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9798_low_40 (Length: 211)
Name: NF9798_low_40
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_40 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 11020147 - 11020357
Alignment:
| Q |
1 |
tcattgtacagatggattatctctttgccattaaaatcattgaagatggtgagagtgttttacttatttttcatcatttgttatctcaggttaaggtgtt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11020147 |
tcattgtacaaatggattatctctttgccattaaaatcattgaagatggtgagagtgttttacttatttttcatcatttgttatctcaggttaaggtgtt |
11020246 |
T |
|
| Q |
101 |
atgtcatatgttatctgattttcgctgtcaatatgtttttcattgatttaatcaaatggctggctttgccaaatatgatcttagtcggcttgttccttta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11020247 |
atgtcatatgttatctgattttcgctgtcaatatgtttctcattgatttaatcaaatggctggctttgccaaatatgatcttagtcggcttgttccttta |
11020346 |
T |
|
| Q |
201 |
aagatttttaa |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
11020347 |
aagatttttaa |
11020357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 31360810 - 31360974
Alignment:
| Q |
1 |
tcattgtacagatggattatctctttgccattaaaatc-attgaagatggtgagagtgttttacttatttttcatcatttgttatctcaggttaaggtgt |
99 |
Q |
| |
|
|||||||| | | ||||||||| ||||||||||||||| ||||||||||||| | ||| ||||| | |||| ||| ||||||| | ||| ||||||||| |
|
|
| T |
31360810 |
tcattgtataaagggattatctatttgccattaaaatcgattgaagatggtgcgggtggtttacgtgttttacataatttgttgtttcatattaaggtgt |
31360909 |
T |
|
| Q |
100 |
tatgtcatatgttatctgattttcgctgtcaatatgtttttcattgatttaatcaaatggctggc |
164 |
Q |
| |
|
||||| ||||| ||| |||||| |||||| |||||| || || |||||||||| ||| |||| |
|
|
| T |
31360910 |
tatgttctatgtcgcctggttttcgttgtcaacatgtttctcgttaatttaatcaagtggttggc |
31360974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 5061347 - 5061238
Alignment:
| Q |
20 |
tctctttgccattaaaatcattgaagatggtgagagtgttttacttatttttcatcatttgttatctcaggttaaggtgttatgtcatatgttatctgat |
119 |
Q |
| |
|
|||||||||||||| ||| |||||||||| || |||||||| | ||||| ||||||||||||||||||||| ||| ||||||||||| | || | |
|
|
| T |
5061347 |
tctctttgccattagaattattgaagatgatgcgagtgtttatgtg--ttttcttcatttgttatctcaggttaaagtgatatgtcatatgacgtttggt |
5061250 |
T |
|
| Q |
120 |
tttcgctgtcaa |
131 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5061249 |
tttcgctgtcaa |
5061238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 44080412 - 44080324
Alignment:
| Q |
22 |
tctttgccattaaaatcattgaagatggtgagagtgttttacttatttttcatcatttgtta-tctcaggttaaggtgttatgtcatat |
109 |
Q |
| |
|
|||| ||||||||||| |||||| |||||| |||||||||| | |||||||| ||| || ||||| |||||||||||||||||||| |
|
|
| T |
44080412 |
tcttcgccattaaaatgattgaaaatggtgctagtgttttacatggttttcatcctttttttgtctcaagttaaggtgttatgtcatat |
44080324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 19996598 - 19996548
Alignment:
| Q |
32 |
taaaatcattgaagatggtgagagtgttttacttatttttcatcatttgtt |
82 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| | |||||| ||||||||| |
|
|
| T |
19996598 |
taaaatgattgaagatggtgtgagtgttttacatgtttttcgtcatttgtt |
19996548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 18991211 - 18991107
Alignment:
| Q |
1 |
tcattgtacagatggattatctctttgccattaaaatcattgaagatggtgagagtgttttacttatttttcatcatttgttatctcaggttaaggtgtt |
100 |
Q |
| |
|
|||||||||| || ||| ||||| |||||||||||| |||||||||||| |||||||| | ||||| ||||||| |||||||| || | ||||| |
|
|
| T |
18991211 |
tcattgtacaaataaattctctctctgccattaaaatgattgaagatggtacaggtgttttatgtgttttttatcattttttatctcatatttacgtgtt |
18991112 |
T |
|
| Q |
101 |
atgtc |
105 |
Q |
| |
|
||||| |
|
|
| T |
18991111 |
atgtc |
18991107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University