View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_low_5 (Length: 453)
Name: NF9798_low_5
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 3414983 - 3414557
Alignment:
| Q |
11 |
cataggttatcgtttatgttggctcatgatctatgacatcttgttctgattcactgatatttgctactagtttccgttaaatcgtttgtcattgcaacta |
110 |
Q |
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| T |
3414983 |
cataggttatcgtttatgttggctcatgatctatgacatcttgttctgattcactgatatttgctactagtttccgttaaatcgtttgtcattgcaacta |
3414884 |
T |
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| Q |
111 |
tttgggtggggtttcatgtagtggattgattagtgtgggttgtttcgggttaacagttggtgtggttaaaccgctgctccaccaacgttcttgacctagt |
210 |
Q |
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| T |
3414883 |
tttgggtggggtttcgtgtagtggattgattagtgtgggttgttttgggttaaccgttggtgtggttaaaccgctgctccaccaatgttcttgacctagt |
3414784 |
T |
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| Q |
211 |
tcgatctcaaaaacttgaaagggtctgtttcaaatcaatattctagattggtttgtgttaaattaagcaaatatctttcaagaccctttcatgctaaagt |
310 |
Q |
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| T |
3414783 |
tcgatctcaaaaacttgaaagggtctgtttcaaatcaatattctagattggtttgtgttaaattaagcaaatatctttcaagaccctttcatgctaaagt |
3414684 |
T |
|
| Q |
311 |
aagcattttaggatcgagagacaaatttgtgtagctatctaaaccaaatatctctatgacctctctttaaccttaatatgtcattgcgcatctctacccc |
410 |
Q |
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| T |
3414683 |
aagcattttaggatcgagagacaaatttgtgtagttatctaaaccaaatatctctctgacctctctttaaccttaatatgtcattgcgcatctctacccc |
3414584 |
T |
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| Q |
411 |
caaatctgaatttccgattcaagatgt |
437 |
Q |
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| T |
3414583 |
caaatctgaatttccgattcaagatgt |
3414557 |
T |
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