View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9798_low_8 (Length: 392)
Name: NF9798_low_8
Description: NF9798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9798_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 147 - 378
Target Start/End: Complemental strand, 46914617 - 46914386
Alignment:
| Q |
147 |
taaacgaactctgtttgtcacccacgatctctaccaacaacatcaaacaataaattccaagaaattacagcataccttttattttctttcacaaaaagat |
246 |
Q |
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| T |
46914617 |
taaacgaactctgtttgtcacccacgatctctaccaacaacatcaaacaataaattccaagaaattacagcatactttttattttctttcacaaaaagat |
46914518 |
T |
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| Q |
247 |
nnnnnnnncctagagattagtactatgataactgaaaacaaacaaaactatttaatctctgcaattatnnnnnnnncaaaacaacattgaaacaccaaaa |
346 |
Q |
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| T |
46914517 |
aaaaaaaacctagagattagtactatgataactgaaaacaaacaaaactatttaaactctgcaattataaaaaaaacaaaacaacattgaaacaccaaaa |
46914418 |
T |
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| Q |
347 |
tgtccttctccaacccccaccaacacaccccc |
378 |
Q |
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| T |
46914417 |
tgtccttctccaacccccaccaacacaccccc |
46914386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 46914741 - 46914672
Alignment:
| Q |
19 |
cctactaccataattgaagaaaaccaagcttattgtacatgagtttgtttgctagtatttgcagactctcttcc |
92 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46914741 |
cctactaccataattgaagaaaaccaagcttattg----tgagtttgtttgctagtatttgcagactctcttcc |
46914672 |
T |
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