View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9799_high_3 (Length: 373)
Name: NF9799_high_3
Description: NF9799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9799_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 41366568 - 41366226
Alignment:
| Q |
19 |
catcattcttcccagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttcct |
118 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366568 |
catcattcttcctagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttcct |
41366469 |
T |
|
| Q |
119 |
tggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366468 |
tggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaac |
41366369 |
T |
|
| Q |
219 |
acttcttggtgtttattcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41366368 |
acttcttggtgtttattcttttttccaaatgctgcccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaaccgatccttcac |
41366269 |
T |
|
| Q |
319 |
ttgcagttattgatttaacaagatttgacacctcttcttctct |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366268 |
ttgcagttattgatttaacaagatttgacacctcttcttctct |
41366226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 361
Target Start/End: Complemental strand, 41332374 - 41332046
Alignment:
| Q |
33 |
gctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggccaacttaaca |
132 |
Q |
| |
|
|||| ||||||| | ||| ||||||| |||||||| ||||||| |||||||||| ||||||||||| |||||| | ||| || | || ||| | |
|
|
| T |
41332374 |
gcttccttgtgaatgcttctgtgatcgtcgatgatgtcttgcattatcatatcaagctctctatgaattttttccattttggtcttctccctactcatgc |
41332275 |
T |
|
| Q |
133 |
tttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttt |
232 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||||| |||||| |||| || || |||||||||| | ||||| ||||||| | | |
|
|
| T |
41332274 |
attgaagcattttaatagaaggatacaaatctgcaatttcaaatcctcctaatagcaccaatactttctccattgctgatatgaacacatcttggtttct |
41332175 |
T |
|
| Q |
233 |
attcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgat |
332 |
Q |
| |
|
|||| |||| ||||| |||| ||||||||| |||||| |||| | ||||| |||| | |||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
41332174 |
attccttttcccaaaagctgcccgcgctgttatcccatttgtcattgagaaaatcttccgagtgagatttacaaccgatccttcacttgcagttattgat |
41332075 |
T |
|
| Q |
333 |
ttaacaagatttgacacctcttcttctct |
361 |
Q |
| |
|
||||||||||||| ||| || |||||||| |
|
|
| T |
41332074 |
ttaacaagatttgtcacttcatcttctct |
41332046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 33 - 361
Target Start/End: Complemental strand, 41328361 - 41328033
Alignment:
| Q |
33 |
gctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggccaacttaaca |
132 |
Q |
| |
|
|||| ||||||| ||||| ||||||| |||||||| ||||| |||||||||| ||||| ||||||||||||| | ||| || | || | | | | |
|
|
| T |
41328361 |
gcttccttgtgaatacttctgtgatcgtcgatgatgtcttgtgctatcatatcaatctctgtatgaagtttttccattttggtcttctccctagtcatcc |
41328262 |
T |
|
| Q |
133 |
tttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttt |
232 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| ||||| ||| |||||| | || || || || ||||| | | ||||| ||||||||| | |
|
|
| T |
41328261 |
attgaagcaatttaatagaaggatacaaatctgcaatttcaaatcttcctaatagcaccactactttctccaatgctggtatgaacacatcttggtgtct |
41328162 |
T |
|
| Q |
233 |
attcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgat |
332 |
Q |
| |
|
|||| |||| ||||| |||| ||||||||| |||||| |||| | ||||| |||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41328161 |
attccttttcccaaaagctgcccgcgctgttatcccatttgtcattgagaaaatcttccgagtgagattaacaactgatccttcacttgcagttattgat |
41328062 |
T |
|
| Q |
333 |
ttaacaagatttgacacctcttcttctct |
361 |
Q |
| |
|
|||||||| ||||||||||| |||||||| |
|
|
| T |
41328061 |
ttaacaaggtttgacacctcatcttctct |
41328033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 49 - 361
Target Start/End: Original strand, 31188513 - 31188825
Alignment:
| Q |
49 |
ttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaat |
148 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||||||| ||||| ||||||| ||||||| ||| || | | || ||| | | ||||| ||||||| |
|
|
| T |
31188513 |
ttttatgatcaacgatgatatcttgcaatatcatatcaatctctttatgaagcttttcaactttcgtcttcgccctactcacccattgaaacattttaac |
31188612 |
T |
|
| Q |
149 |
agaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaat |
248 |
Q |
| |
|
||||||||||| ||| |||| | ||||| |||||| | || ||| ||||| ||||||||||| || |||||||||||||| || |||| ||||| |
|
|
| T |
31188613 |
agaaggatacacatcagcaatacaaaattctcccagcaaactagctatctcctttattgctgatttgaaagcttcttggtgtttactccttttcccaaac |
31188712 |
T |
|
| Q |
249 |
gctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgaca |
348 |
Q |
| |
|
|||| || | || ||||| ||| | | | | |||| | ||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31188713 |
gctgctcgtgtcgttatccctgatgtcattaaaaaaatcttatgactgagattaacaattgatccttcacttgcagatattgatttaacaagatttgaca |
31188812 |
T |
|
| Q |
349 |
cctcttcttctct |
361 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31188813 |
cctcttcttctct |
31188825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 361
Target Start/End: Complemental strand, 41316389 - 41316066
Alignment:
| Q |
38 |
cttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggccaacttaacatttga |
137 |
Q |
| |
|
||||||| | ||||||||||| |||||||| ||||||||| |||||||| |||| | ||||||||||| | ||| || | | | ||| || |||| |
|
|
| T |
41316389 |
cttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtcatatcaagctctttgtgaagtttttccattttggtcttcgctctactcaagcattga |
41316290 |
T |
|
| Q |
138 |
agaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattct |
237 |
Q |
| |
|
|| | ||||||||||||| ||||||| ||| | ||| |||||||| | | || ||||| ||||||||| ||||||||||||||||||| || |
|
|
| T |
41316289 |
agcaatttaatagaaggaaacaaatccacaatacaaacgcctcccaacaaacttgctacttcctctattgctgatctaaacacttcttggtgtttgctcc |
41316190 |
T |
|
| Q |
238 |
tttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgatttaac |
337 |
Q |
| |
|
|||| ||||| || | |||||||| |||||| ||| ||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41316189 |
ttttcccaaaagccgctcgcgctgttatcccatatgtcgttgacaaaatcttctgagtgagattaacaactgatccttcacttgcagttattgatttaac |
41316090 |
T |
|
| Q |
338 |
aagatttgacacctcttcttctct |
361 |
Q |
| |
|
|||||||| ||| || |||||||| |
|
|
| T |
41316089 |
aagatttgtcacttcatcttctct |
41316066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 361
Target Start/End: Complemental strand, 41324458 - 41324135
Alignment:
| Q |
38 |
cttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggcca-acttaacatttg |
136 |
Q |
| |
|
||||||| | ||||||||||| ||||| || |||||||||||||||||| ||||| | ||||||||||| | |||| |||| ||| ||| | ||| |
|
|
| T |
41324458 |
cttgtgaatgcttttgtgatcgtcgataatgtcttgcaatatcatatcaatctctttgtgaagtttttcca-ttttggccttcgccctactcacgcattg |
41324360 |
T |
|
| Q |
137 |
aagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattc |
236 |
Q |
| |
|
||| | ||||||||||||||||||||| ||| | ||| |||||||| | | | |||||||| | ||||||||||||| || |||||||| || |
|
|
| T |
41324359 |
aagcaatttaatagaaggatacaaatcaacaatacaaatgcctcccaacaaacttactatttcctctactgctgatttaaacgattgctggtgtttgctc |
41324260 |
T |
|
| Q |
237 |
ttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgatttaa |
336 |
Q |
| |
|
|||| ||||| || | ||||| ||| |||||| ||| | ||||| |||| | |||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
41324259 |
cttttgccaaaagccgcccgcgttgttatcccatatgtcattgagaaaatcttatgagtgagattaacaattgatccttcacttgcagttattgatgtag |
41324160 |
T |
|
| Q |
337 |
caagatttgacacctcttcttctct |
361 |
Q |
| |
|
|||||||||| || || |||||||| |
|
|
| T |
41324159 |
caagatttgatacttcatcttctct |
41324135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 49 - 361
Target Start/End: Original strand, 31178468 - 31178780
Alignment:
| Q |
49 |
ttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaat |
148 |
Q |
| |
|
|||| |||||||||| ||| |||||||||||||||||| ||||| |||||| ||||||| ||| || | || ||| | | |||||| |||||||| |
|
|
| T |
31178468 |
ttttatgatcatcgacgatatcttgcaatatcatatcaatctctttatgaaacttttcaaatttggtcttcaccccactcacccgttgaagcattttaat |
31178567 |
T |
|
| Q |
149 |
agaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaat |
248 |
Q |
| |
|
||||||||||| ||| |||| | |||||||||||| | | ||||||||| |||||||||| ||||||| ||||||||||||| |||| ||||| |
|
|
| T |
31178568 |
agaaggatacacatcagcaatacaaaatcctcccatcaaactcgctatttcctttattgctgattggaacacttgttggtgtttattccttttcccaaac |
31178667 |
T |
|
| Q |
249 |
gctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgaca |
348 |
Q |
| |
|
|||| || | || ||| | ||| | || || |||| | ||| ||||||| ||||||||||||| ||||| || ||| ||||||| ||||||||||| |
|
|
| T |
31178668 |
gctgctcgtgtcgttatcgccgatgtcattgcgaaaatcttatgactgagatttacaactgatcctttacttgtagatatcgatttaataagatttgaca |
31178767 |
T |
|
| Q |
349 |
cctcttcttctct |
361 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
31178768 |
cctcttattctct |
31178780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 361
Target Start/End: Complemental strand, 31225300 - 31224988
Alignment:
| Q |
49 |
ttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaat |
148 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||| ||||| ||||||| ||||||| ||| || | | || ||| | | |||||| ||||| || |
|
|
| T |
31225300 |
ttttatgatcatcgatgatatcttgcaatatcatatcaatctctttatgaagcttttcaactttggtcttcgccctactcacccattgaagcatttttat |
31225201 |
T |
|
| Q |
149 |
agaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaat |
248 |
Q |
| |
|
||||||||||| ||| ||| | |||||||||||| | || ||| ||||| | ||||||| | ||||||| || || |||||| |||| ||||| |
|
|
| T |
31225200 |
agaaggatacacatcaacaatacaaaatcctcccatcaaactagttatctcctttagtgctgatctgaacacttgatgctgcttattccttttcccaaac |
31225101 |
T |
|
| Q |
249 |
gctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgaca |
348 |
Q |
| |
|
|||| | | | || ||||| ||| | || |||| | ||| | |||||||||| ||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
31225100 |
gctgcctgtgtcgttatccccgatgtcattgcataaatcttatgactcagattaacaattgatccttcacttgcagatattgattcaacaagatttgaca |
31225001 |
T |
|
| Q |
349 |
cctcttcttctct |
361 |
Q |
| |
|
||||||||||||| |
|
|
| T |
31225000 |
cctcttcttctct |
31224988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 214
Target Start/End: Complemental strand, 41369869 - 41369703
Alignment:
| Q |
49 |
ttttgtgatcatcgatgatctcttgcaatatcatatca-gtctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaa |
147 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| |||||| | || ||| ||||||||||| | ||| || ||| || ||||| | ||||||| ||||||| |
|
|
| T |
41369869 |
ttttgtgatcattgatgatatcttgcaatataatatcatgcctttctctgaagtttttccattttggtctttgccctacttaccctttgaagtattttaa |
41369770 |
T |
|
| Q |
148 |
tagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgattt |
214 |
Q |
| |
|
|||||||||||||||| |||| |||||||| |||||| ||| | | ||||| |||||||||||| |
|
|
| T |
41369769 |
tagaaggatacaaatcagcaatgcaaaatccttccaataactttattgattcctccattgctgattt |
41369703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 134 - 361
Target Start/End: Complemental strand, 41322344 - 41322116
Alignment:
| Q |
134 |
ttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttta |
233 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| ||||| ||| |||||| | || || || || ||||| | | ||||| ||||||||| || |
|
|
| T |
41322344 |
ttgaagcaatttaatagaaggatacaaatctgcaatttcaaatcttcctaatagcaccactactttctccaatgctggtatgaacacatcttggtgtcta |
41322245 |
T |
|
| Q |
234 |
ttcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgca-gttattgat |
332 |
Q |
| |
|
||| |||| ||||| | | || |||||| |||||| ||| | ||||| |||| | | | |||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
41322244 |
ttccttttcccaaaaaccgccctcgctgttatcccatatgtcattgagaaaatcttctcactgagattaacaactgatccttcacttaaaagttattgat |
41322145 |
T |
|
| Q |
333 |
ttaacaagatttgacacctcttcttctct |
361 |
Q |
| |
|
||||||||||||| ||| || |||||||| |
|
|
| T |
41322144 |
ttaacaagatttgtcacttcatcttctct |
41322116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 361
Target Start/End: Complemental strand, 41337203 - 41336975
Alignment:
| Q |
133 |
tttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgttt |
232 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||| | ||||| |||||||||| ||| ||||| |||| |||||| |||| || ||||||| | |
|
|
| T |
41337203 |
tttgaagtattttaatagaaggatacaagtcagcaatacaaaattctcccaataggcccaatgcttcctctattgttgatttgaacaattgttggtgtct |
41337104 |
T |
|
| Q |
233 |
attcttttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgat |
332 |
Q |
| |
|
|||||||| ||||| |||| || || |||||| || | ||||| |||| | || ||||||||| | |||||||||| |||||| ||||||| |
|
|
| T |
41337103 |
gttctttttcccaaacgctgaacgtgccacgatcccataagtcattgagaaaatcgacttagagagattaacgattgatccttcatttgcagatattgat |
41337004 |
T |
|
| Q |
333 |
ttaacaagatttgacacctcttcttctct |
361 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
41337003 |
ttaacaagatcggacacctcttcttctct |
41336975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 322
Target Start/End: Complemental strand, 41286325 - 41286141
Alignment:
| Q |
138 |
agaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattct |
237 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| |||||||||||| || | ||| ||||| ||||||| |||| || ||||||||||| | |||| |
|
|
| T |
41286325 |
agaaatttaatagaaggatacaaatcaacaatgcaaaatcctcccatcaggctcaatgcttcctccattgctaatttgaatgcttcttggtgtatgttct |
41286226 |
T |
|
| Q |
238 |
tttttccaaatgctgtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgc |
322 |
Q |
| |
|
|||| ||||| | || ||||| || |||||| ||| ||| | |||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
41286225 |
ttttcccaaaagttgcacgcgccgttatcccataggttgttgacaaaatcttctgagtgagattaacaactgatccttcacttgc |
41286141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 41431066 - 41430997
Alignment:
| Q |
292 |
gagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctct |
361 |
Q |
| |
|
||||||||||||||| ||||||||||| || | ||| |||||||| || ||||| |||||||||||||| |
|
|
| T |
41431066 |
gagtgagattaacaattgatccttcacatgtacatatggatttaactagttttgaaacctcttcttctct |
41430997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 106
Target Start/End: Complemental strand, 41310639 - 41310581
Alignment:
| Q |
48 |
cttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttc |
106 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| | ||||| | |||| |||||| |
|
|
| T |
41310639 |
cttttgtgatcgtcgatgatgtcttgcaatatcatataaatctctttgtgaactttttc |
41310581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 41431311 - 41431253
Alignment:
| Q |
49 |
ttttgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttca |
107 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||| ||||||| |||||| |||||||||| |
|
|
| T |
41431311 |
ttttatgatcattgatgatgtcttgcaatatcgtatcagtttctctacaaagtttttca |
41431253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 361
Target Start/End: Original strand, 31185277 - 31185305
Alignment:
| Q |
333 |
ttaacaagatttgacacctcttcttctct |
361 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31185277 |
ttaacaagatttgacacctcttcttctct |
31185305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 361
Target Start/End: Original strand, 17249204 - 17249513
Alignment:
| Q |
52 |
tgtgatcatcgatgatctcttgcaatatcatatcagtctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaataga |
151 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||| | || |||||||||||||| | ||| | | | ||||| | ||| ||| ||||| ||||| |
|
|
| T |
17249204 |
tgtgatcatctatgatatcttgcaatatcatatcaatttccctatgaagtttttccattttggttttcacctgacttacccttttaagtattttgataga |
17249303 |
T |
|
| Q |
152 |
aggatacaaatctgcaaaagaaaatcctcccaatagcttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgct |
251 |
Q |
| |
|
|||||||||||| ||| | ||||||||||||| | | | |||||||| ||||||||||| ||||||| ||||||||| ||| |||| || || ||| |
|
|
| T |
17249304 |
aggatacaaatcaacaatacaaaatcctcccaacaaactcactatttcctctattgctgatttgaacacttgttggtgtttgttccttttcccgaaagct |
17249403 |
T |
|
| Q |
252 |
gtccgcgctgtcatcccaattgttaatgagagaatcatttgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgacacct |
351 |
Q |
| |
|
| ||||| |||||| |||||| || |||| | ||||||||||||||||| |||||||||||| | ||||||||||||||||| | |||| | |
|
|
| T |
17249404 |
gctcgcgccactatcccatatgttaaagaagaaatcttctgagtgagattaacaacacatccttcacttgaaaatattgatttaacaagatctaacactt |
17249503 |
T |
|
| Q |
352 |
cttcttctct |
361 |
Q |
| |
|
|||||||||| |
|
|
| T |
17249504 |
cttcttctct |
17249513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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