View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9799_low_11 (Length: 215)

Name: NF9799_low_11
Description: NF9799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9799_low_11
NF9799_low_11
[»] chr3 (1 HSPs)
chr3 (119-200)||(8522339-8522420)
[»] chr5 (3 HSPs)
chr5 (119-200)||(42116965-42117046)
chr5 (106-200)||(42128098-42128192)
chr5 (106-200)||(42122703-42122797)
[»] chr4 (1 HSPs)
chr4 (106-200)||(11117360-11117454)
[»] chr2 (2 HSPs)
chr2 (103-200)||(12247656-12247753)
chr2 (121-200)||(11995177-11995256)
[»] chr6 (1 HSPs)
chr6 (119-200)||(25523810-25523891)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 8522339 - 8522420
Alignment:
Q  119 tctgattctgattcgtgattgaactatggttcctcgtcattcttgtccttctttttactctcctcttaggctgaccaccaaa 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8522339 tctgattctgattcgtgattgaactttggttcctcgtcattcttgtccttcttttcactctcctcttaggctgaccaccaaa 8522420  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 42116965 - 42117046
Alignment:
Q  119 tctgattctgattcgtgattgaactatggttcctcgtcattcttgtccttctttttactctcctcttaggctgaccaccaaa 200  Q
    |||||||||||||| || ||| || |||||||||  |||||||||| |||||||| ||||| ||||||||||||||||||||    
T  42116965 tctgattctgattcatggttgtaccatggttccttctcattcttgttcttcttttcactcttctcttaggctgaccaccaaa 42117046  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 42128098 - 42128192
Alignment:
Q  106 gacatttgcaccatctgattctgattcgtgattgaactatggttcctcgtcattcttgtccttctttttactctcctcttaggctgaccaccaaa 200  Q
    ||||||||||||||||||||||||||| || |||||| |||   |||| ||| |||||| || ||| | ||||| ||||||||||||||||||||    
T  42128098 gacatttgcaccatctgattctgattcatggttgaaccatgtgccctcctcactcttgttctccttgtcactcttctcttaggctgaccaccaaa 42128192  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 42122703 - 42122797
Alignment:
Q  106 gacatttgcaccatctgattctgattcgtgattgaactatggttcctcgtcattcttgtccttctttttactctcctcttaggctgaccaccaaa 200  Q
    ||||||||||||||||||||||||||| || |||||| |||   |||| ||| |||||| || ||| | ||||| ||||||||| ||||||||||    
T  42122703 gacatttgcaccatctgattctgattcatggttgaaccatgtgccctcctcactcttgttctccttgtcactcttctcttaggcggaccaccaaa 42122797  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 11117360 - 11117454
Alignment:
Q  106 gacatttgcaccatctgattctgattcgtgattgaactatggttcctcgtcattcttgtccttctttttactctcctcttaggctgaccaccaaa 200  Q
    ||||||||||||||||||||||||||| || |||||| |||    ||| ||| |||||| || ||| | ||||| ||||||||||||||||||||    
T  11117360 gacatttgcaccatctgattctgattcatgtttgaaccatgtgcgctcctcactcttgttctccttgtcactcttctcttaggctgaccaccaaa 11117454  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 12247656 - 12247753
Alignment:
Q  103 tacgacatttgcaccatctgattctgattcgtgattgaactatggttcctcgtcattcttgtccttctttttactctcctcttaggctgaccaccaaa 200  Q
    |||||||||  |||||| |||||||||||| || ||| || |||||||||  ||| |||||| || ||||| ||||| || |||||||||||||||||    
T  12247656 tacgacattgccaccatttgattctgattcatggttgcaccatggttcctactcactcttgttctccttttcactcttcttttaggctgaccaccaaa 12247753  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 11995256 - 11995177
Alignment:
Q  121 tgattctgattcgtgattgaactatggttcctcgtcattcttgtccttctttttactctcctcttaggctgaccaccaaa 200  Q
    |||||||||||| || ||| || |||||||||  ||| |||||| || ||||| ||||| || |||||||||||||||||    
T  11995256 tgattctgattcatggttgcaccatggttcctactcactcttgttctccttttcactcttcttttaggctgaccaccaaa 11995177  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 25523891 - 25523810
Alignment:
Q  119 tctgattctgattcgtgattgaactatggttcctcgtcattcttgtccttctttttactctcctcttaggctgaccaccaaa 200  Q
    |||||||||||||| ||  || || ||| |||||| |||||||||||||| |||| ||  | |||||||||||||| |||||    
T  25523891 tctgattctgattcatggctgtaccatgattcctcctcattcttgtcctttttttcacctttctcttaggctgaccgccaaa 25523810  T

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