View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9799_low_3 (Length: 418)

Name: NF9799_low_3
Description: NF9799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9799_low_3
NF9799_low_3
[»] chr2 (1 HSPs)
chr2 (19-408)||(2433383-2433773)
[»] chr6 (1 HSPs)
chr6 (21-412)||(12438215-12438607)
[»] chr5 (4 HSPs)
chr5 (31-410)||(41654449-41654826)
chr5 (31-410)||(41646914-41647291)
chr5 (31-410)||(41620697-41621074)
chr5 (98-410)||(41465640-41465953)
[»] chr1 (2 HSPs)
chr1 (84-138)||(12636975-12637029)
chr1 (84-239)||(12609879-12610035)
[»] chr3 (4 HSPs)
chr3 (84-138)||(23145894-23145948)
chr3 (98-191)||(22986265-22986359)
chr3 (84-138)||(23036144-23036198)
chr3 (84-136)||(23039015-23039067)
[»] chr8 (1 HSPs)
chr8 (330-405)||(5022259-5022334)


Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Complemental strand, 2433773 - 2433383
Alignment:
Q  19 atagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagcaaatgtgattcctggacatattctccttcctgca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433773 atagggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagcaaatgtgattcctggacatattctccttcctgca 2433674  T
Q  119 ccaaaaggtatgtactcaaa-ttagaccctttgtaatcaactagacaatccatgaacctctcaggataaaacttttctccttccctccaatacttttggt 217  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433673 ccaaaaggtatgtactcaaaattagaccctttgtaatcaactagacaatccatgaacctctcaggataaaacttttctccttccctccaatacttttggt 2433574  T
Q  218 ctcttcctattgcccatccattcacaaacacttgtgttccagatgatattgtgtatccattaatctcacaagtttcaatacactctcttggtagtagtag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2433573 ctcttcctattgcccatccattcacaaacacttgtgttccagatggtattgtgtatccattaatctcacaagtttcaatacactctcttggtagtagtag 2433474  T
Q  318 aggactaggtgggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcctttg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2433473 aggactaggtgggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaaaatttatttcatcaatatatcctttg 2433383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 412
Target Start/End: Original strand, 12438215 - 12438607
Alignment:
Q  21 agggaagtccccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagcaaatgtgattcctggacatattctccttcctgcacc 120  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||| | |  |  ||| || ||   ||| || ||||| ||||| ||||| |||||    
T  12438215 agggaagtccccaatcaaaatagtacaacaactgagccagaggaaattccataccaacttcggcgaacaagatgccgggacacattcttcttccagcacc 12438314  T
Q  121 aaaaggtatgtactc-aaattagaccctttgtaatcaactagacaatccatgaacctctcaggataaaacttttctccttccctccaatacttttggtct 219  Q
    |||||||||  |||| |||||||||||||||||||||| | ||||||| || || |||||||||| |||||||||||||||  ||||||||||| |||||    
T  12438315 aaaaggtataaactcgaaattagaccctttgtaatcaattggacaatcaataaatctctcaggattaaacttttctccttcattccaatactttgggtct 12438414  T
Q  220 cttcctattgcccatccattcacaaacacttgtgttccagatgatattgtgtatccattaatctcacaagtttcaatacactctcttggtagtagtagag 319  Q
    ||||| ||||||||| ||||||||| |||||||||||| | || |||| ||||||| |||| | ||||| ||||||||||||||||||| | ||||||||    
T  12438415 cttccaattgcccatgcattcacaagcacttgtgttccggctggtattatgtatccgttaaccacacaattttcaatacactctcttggaattagtagag 12438514  T
Q  320 gactaggtgggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcctttgcttc 412  Q
    ||| ||| |||||||||||||||||||||||||| | |||||||| |||||| ||||||||||||||||||||||||| |||||| |||||||    
T  12438515 gaccaggagggtgcaatcttaaggtttctttaatcactgcttttaaatattttagttcttgaagatttatttcatcaacatatcccttgcttc 12438607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 31 - 410
Target Start/End: Complemental strand, 41654826 - 41654449
Alignment:
Q  31 ccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagcaaatgtgattcctggacatattctccttcctgcaccaaaaggtatg 130  Q
    |||||||||| | |||| ||| || |||||||||| ||||| | ||| | ||||||| | |||||| ||||| |||||| ||||||||||||||||||||    
T  41654826 ccaatcaaaagaatacagcaactgtgcaagaggaagttctatactagatgcagcaaaagagattccaggacacattctctttcctgcaccaaaaggtatg 41654727  T
Q  131 tactcaaa-ttagaccctttgtaatcaactagacaatccatgaacctctcaggataaaacttttctccttccctccaatacttttggtctcttcctattg 229  Q
     ||||||| ||||||||| || |||||| |  | |||||| ||||||||| ||||||||||||||||||||  |||||||||||||||||||||| ||||    
T  41654726 aactcaaaattagaccctctgaaatcaattgaagaatccaagaacctctctggataaaacttttctccttcaatccaatacttttggtctcttccaattg 41654627  T
Q  230 cccatccattcacaaacacttgtgttccagatgatattgtgtatccattaatctcacaagtttcaatacactctcttggtagtagtagaggactaggtgg 329  Q
    ||||| |||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| || |  || | |||| |||| ||    
T  41654626 cccatgcattcacaaacacttgtgttccagctggtattgtgtatccatttatctcacaagtttcaatacactctctaggaa--ag-acaggattaggagg 41654530  T
Q  330 gtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcctttgct 410  Q
     |||| |||||| ||||||||||| | |||||||| |||||||||||||||||||| | ||||||||| ||||||| ||||    
T  41654529 atgcactcttaatgtttctttaataactgcttttagatatttcagttcttgaagatctttttcatcaacatatcctctgct 41654449  T

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Target: chr5; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 31 - 410
Target Start/End: Complemental strand, 41647291 - 41646914
Alignment:
Q  31 ccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagcaaatgtgattcctggacatattctccttcctgcaccaaaaggtatg 130  Q
    |||||||||| | |||| ||| || |||||||||| ||||| | ||| | ||||||| | |||||| ||||| |||||| ||||||||||||||||||||    
T  41647291 ccaatcaaaagaatacagcaactgtgcaagaggaagttctatactagatgcagcaaaagagattccaggacacattctctttcctgcaccaaaaggtatg 41647192  T
Q  131 tactcaaa-ttagaccctttgtaatcaactagacaatccatgaacctctcaggataaaacttttctccttccctccaatacttttggtctcttcctattg 229  Q
     ||||||| ||||||||| || ||| || | || |||||| ||||||||| ||||||||||||||||||||  ||||||| |||| ||||||||| ||||    
T  41647191 aactcaaaattagaccctctgaaattaattggagaatccaagaacctctctggataaaacttttctccttcaatccaatatttttcgtctcttccaattg 41647092  T
Q  230 cccatccattcacaaacacttgtgttccagatgatattgtgtatccattaatctcacaagtttcaatacactctcttggtagtagtagaggactaggtgg 329  Q
    |||||  ||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| || |  || | |||| |||  ||    
T  41647091 cccatgaattcacaaacacttgtgttccagctggtattgtgtatccatttatctcacaagtttcaatacactctctaggaa--ag-ataggattagaagg 41646995  T
Q  330 gtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcctttgct 410  Q
    |||||||||||||||||||||||| | |||||||| | ||||||||| |||||||| | ||||||||| ||||||| ||||    
T  41646994 gtgcaatcttaaggtttctttaataactgcttttagaaatttcagtttttgaagatctttttcatcaacatatcctctgct 41646914  T

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Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 31 - 410
Target Start/End: Original strand, 41620697 - 41621074
Alignment:
Q  31 ccaatcaaaatagtacaacaattgagcaagaggaaattctaaattaggttcagcaaatgtgattcctggacatattctccttcctgcaccaaaaggtatg 130  Q
    ||||||||||||| | ||||| || |||||||||| |||||   |||||  ||||||    || || ||||| |||||| |||||||||||||||||| |    
T  41620697 ccaatcaaaatagaataacaactgtgcaagaggaagttctatggtaggtgtagcaaacaaaatgccaggacacattctctttcctgcaccaaaaggtaag 41620796  T
Q  131 tactcaaa-ttagaccctttgtaatcaactagacaatccatgaacctctcaggataaaacttttctccttccctccaatacttttggtctcttcctattg 229  Q
     | ||||| || || ||||||||||||| | || |||||| ||||||||| ||||||||||| ||||| || |||||||  |||||||||||| | ||||    
T  41620797 aaatcaaaattggatcctttgtaatcaattggagaatccaagaacctctctggataaaacttgtctccatcactccaatttttttggtctcttgcaattg 41620896  T
Q  230 cccatccattcacaaacacttgtgttccagatgatattgtgtatccattaatctcacaagtttcaatacactctcttggtagtagtagaggactaggtgg 329  Q
    |||||  |||||| ||||| ||||||||    | ||||||||||||||| |||||||||||||||  |||||||||   ||| |||| |||| |||| ||    
T  41620897 cccatgtattcactaacacgtgtgttccgcccggtattgtgtatccatttatctcacaagtttcagcacactctct---tagaagtaaaggattaggagg 41620993  T
Q  330 gtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcctttgct 410  Q
     |||| ||| |||||||||||||| | |||||||| | |||||||||||| ||||| | ||||||||| ||||||| ||||    
T  41620994 atgcagtctgaaggtttctttaataactgcttttagaaatttcagttcttcaagatctttttcatcaacatatcctctgct 41621074  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 410
Target Start/End: Complemental strand, 41465953 - 41465640
Alignment:
Q  98 ggacatattctccttcctgcaccaaaaggtatgtactcaa-attagaccctttgtaatcaactagacaatccatgaacctctcaggataaaacttttctc 196  Q
    ||||| |||||||| || ||||| || |||||||| |||| |||||| ||||| ||||||| |  ||  ||||  || ||||| |||  |||||||||      
T  41465953 ggacaaattctcctaccagcaccgaacggtatgtattcaatattagaacctttataatcaattgaactctccaaaaatctctccggaataaacttttccg 41465854  T
Q  197 cttccctccaatacttttggtctcttcctattgcccatccattcacaaacacttgtgttccag-atgatattgtgtatccattaatctcacaagtttcaa 295  Q
     ||| |||||||||||| | |||||||| || |||||| |||| || | |||||   |||| | ||| ||||||||| || |||||||||||||||||      
T  41465853 gttcactccaatactttggatctcttccaatcgcccatgcatttactatcactttgtttccggcatg-tattgtgtagcctttaatctcacaagtttctc 41465755  T
Q  296 tacactctcttggtagtagtagaggactaggtgggtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatc 395  Q
    | || ||||| || || || |||||   ||| |||||||||||||  |||||||| || | |||||| | |||||||||| ||||||||  | |||||||    
T  41465754 tgcattctctagggagaagaagagggaaaggagggtgcaatcttagtgtttctttgatgactgctttcaaatatttcagtccttgaagagatgtttcatc 41465655  T
Q  396 aatatatcctttgct 410  Q
    ||| |||||||||||    
T  41465654 aatgtatcctttgct 41465640  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 12636975 - 12637029
Alignment:
Q  84 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa 138  Q
    |||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||    
T  12636975 caaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaa 12637029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 239
Target Start/End: Original strand, 12609879 - 12610035
Alignment:
Q  84 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactc-aaattagaccctttgtaatcaactaga-caatccatgaacctctcag 181  Q
    |||||||| | |||||||||||||| ||||| |||||||| || |||||||| ||||||  ||||||||| |||| |||| | | | ||||| ||||| |    
T  12609879 caaatgtgctacctggacatattcttcttccagcaccaaagggaatgtactcaaaattattccctttgtagtcaa-tagagctaccgatgaatctctccg 12609977  T
Q  182 gataaaacttttctccttccctccaatacttttggtctcttcctattgcccatccatt 239  Q
    |||||||||| |||  |||  |||| |||||| | |||||||| || |||||| ||||    
T  12609978 gataaaacttctctggttcagtccagtactttggatctcttccaatcgcccatgcatt 12610035  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 23145894 - 23145948
Alignment:
Q  84 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa 138  Q
    |||||||| | |||||||||||||| ||||| ||||||||||| |||||||||||    
T  23145894 caaatgtgctccctggacatattcttcttccagcaccaaaaggaatgtactcaaa 23145948  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 191
Target Start/End: Original strand, 22986265 - 22986359
Alignment:
Q  98 ggacatattctccttcctgcaccaaaaggtatgtactc-aaattagaccctttgtaatcaactag-acaatccatgaacctctcaggataaaactt 191  Q
    ||||| ||||||||||| |||||||| || |||||||| |||||||  |||||| |||||| ||| || ||| || ||||||||||||||||||||    
T  22986265 ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaa-tagaactatcaataaacctctcaggataaaactt 22986359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 23036144 - 23036198
Alignment:
Q  84 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaa 138  Q
    |||||||| | ||||| |||||||| ||||| ||||||||||| |||||||||||    
T  23036144 caaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactcaaa 23036198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 23039015 - 23039067
Alignment:
Q  84 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactca 136  Q
    |||||||| | ||||| |||||||| ||||| ||||||||||| |||||||||    
T  23039015 caaatgtgctccctgggcatattcttcttccggcaccaaaaggaatgtactca 23039067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 405
Target Start/End: Original strand, 5022259 - 5022334
Alignment:
Q  330 gtgcaatcttaaggtttctttaattattgcttttacatatttcagttcttgaagatttatttcatcaatatatcct 405  Q
    ||||| |||||||||||||||||| | | |||||| | |||||| |||||||||||  | |||||||| |||||||    
T  5022259 gtgcattcttaaggtttctttaatcacttcttttagaaatttcaattcttgaagatccacttcatcaacatatcct 5022334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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