View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9799_low_8 (Length: 240)
Name: NF9799_low_8
Description: NF9799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9799_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 225
Target Start/End: Original strand, 33356820 - 33356982
Alignment:
| Q |
66 |
gaaatatatatgacattgtactaatattgtccaataatatataatttgattcatttcatctg-nnnnnnnnnnagtccctttatttnnnnnnnnntggag |
164 |
Q |
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| T |
33356820 |
gaaatatatatgacattgtactaatattgtccaataatatataatttgattcatttcatctgtttttgtttttagtctctctattttttttaaaatggag |
33356919 |
T |
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| Q |
165 |
ttttggtttccaattt--aaaaaatgagtttttgattctacaattttacattttcttgaattt |
225 |
Q |
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| T |
33356920 |
ttttggttcccaattttaaaaaaatgagtttttggttctccaattttacattttcttaaattt |
33356982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 33378886 - 33378943
Alignment:
| Q |
66 |
gaaatatatatgacattgtactaatattgtccaataatatataatttgattcatttca |
123 |
Q |
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| T |
33378886 |
gaaatatatatgatactgtacaaatattgtcaaataatatttaatttgattgatttca |
33378943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 33383207 - 33383260
Alignment:
| Q |
69 |
atatatatgacattgtactaatattgtccaataatatataatttgattcatttc |
122 |
Q |
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| T |
33383207 |
atatatatgatactgtacaaatattgtcgaatgatatataatttgatttatttc |
33383260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 39306761 - 39306722
Alignment:
| Q |
88 |
aatattgtccaataatatataatttgattcatttcatctg |
127 |
Q |
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| T |
39306761 |
aatattgtctaataatatataatttgattcatttcatctg |
39306722 |
T |
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