View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9800_high_14 (Length: 241)
Name: NF9800_high_14
Description: NF9800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9800_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7459629 - 7459407
Alignment:
| Q |
1 |
tttattttatgtgtttgtatttgatcttgtgttcttctcttcaaatttcgaactctctaaagcttttagtagttttcaattcgaaatcggaatttggtac |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |||||||||||| |
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| T |
7459629 |
tttattttatgggtttgtatttgatcttgtgttcttctcttcaaatttcgaactctctaaagcttttaatagttttcaattccaacttggaatttggtac |
7459530 |
T |
|
| Q |
101 |
caacaaagaatttggtccttaaagttagcttaaaggataagcgtactcaaacaatatttgtacgtcctacaacttgaaaatttgagcaatgtggactcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |
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| T |
7459529 |
caacaaagaatttggtccttaaagttagcttaaaggataagagtactcaaacaatatttgtacgtccaacaacttaaaaacttgagcaatgtggactcta |
7459430 |
T |
|
| Q |
201 |
aacaaactttaatacccacttta |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
7459429 |
aacaaactttaatacccacttta |
7459407 |
T |
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