View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9800_high_3 (Length: 438)
Name: NF9800_high_3
Description: NF9800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9800_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 36986724 - 36986307
Alignment:
| Q |
1 |
atgtgagcgaccaaaaatggctcagaaattctaaaatttgctatttgtaggaaatgaaaagaacatattttattttctacctg--agtaagaaacttaat |
98 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36986724 |
atgtgagcgacgaaaaatggctcagaaattctaaagtttgctatttgtaggaaatgaaaagaacatattttattttctacctgtgagtaagaaacttaat |
36986625 |
T |
|
| Q |
99 |
gataccaccctactctaaagtatatgtcttcagattgaattatcttctcccttgtatgcatgagtaatagccataaatatatgttgaaaatgttcaaaaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36986624 |
gataccaccctactctaaagtatatgtcttcagattgaattatcttctcccttgtatgcatgagtaatagccataaatatatgttgaaaatgttcaaaaa |
36986525 |
T |
|
| Q |
199 |
cagtgtgcgtattcctccgattatattggttggcttgcaggaagtacttggtctctatgctaatacttggatgttgcaggatattcctgtcttgccgaaa |
298 |
Q |
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| T |
36986524 |
cagtgtgagtattcctccgattatattggttggcttgcaggaagtacttggtctctatgctaatacttggatgttgcaggatattcctgtcttgccgaaa |
36986425 |
T |
|
| Q |
299 |
attgggccaagtcaaaatgcatcattagccacagtggaaaccaatgtaacagcagaaagaaacagcgctggtggagaggttcctcagagttctacttcta |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36986424 |
attgggccaagtcaaaatgcatcattagccacagtggaaaccaatgtaacagcagaaagaaacagcgctggtggagaggttcctcagagttctacttcta |
36986325 |
T |
|
| Q |
399 |
cacagaaggaagtgcaga |
416 |
Q |
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|||||||||||||||||| |
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| T |
36986324 |
cacagaaggaagtgcaga |
36986307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 116 - 393
Target Start/End: Complemental strand, 36980913 - 36980637
Alignment:
| Q |
116 |
aagtatatgtcttcagattgaattatcttctccctt-gtatgcatgagtaatag---ccataaatatatgttgaaaatgttcaaaaacagtgtgcgtatt |
211 |
Q |
| |
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||||||| ||||||||||||||||| ||||||||| |||||||||||||||| || || ||||||||||||||||||| |||| || |||| |
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| T |
36980913 |
aagtatagatcttcagattgaattattttctccctttgtatgcatgagtaataataaccttagatatatgttgaaaatgttcgaaaa-----tgtttatt |
36980819 |
T |
|
| Q |
212 |
cctccgattatattggttggcttgcaggaagtacttggtctctatgctaatacttggatgttgcaggatattcctgtcttgccgaaaattgggccaagtc |
311 |
Q |
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||| |||||||||| | ||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |||||| ||||||||| |
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| T |
36980818 |
gttccaattatattgggttgcttgtatgaagtacttggtctctatgcttatatttggatgttgcaggatattcctgtcatgctaaaaattaggccaagtc |
36980719 |
T |
|
| Q |
312 |
aaaatgcatcattagccacagtggaaaccaatgtaacagcagaaagaaacagcgctggtggagaggttcctcagagttctac |
393 |
Q |
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| T |
36980718 |
aaaatgcatcatcagtcacagtggaaaccaaaggaacagcagagagtgaaagggctggtggagaagttcctcggagttctac |
36980637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 239 - 391
Target Start/End: Complemental strand, 36985330 - 36985178
Alignment:
| Q |
239 |
gaagtacttggtctctatgctaatacttggatgttgcaggatattcctgtcttgccgaaaattgggccaagtcaaaatgcatcattagccacagtggaaa |
338 |
Q |
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||||||||| |||||||||||| || ||||||||||||||||||||||||| | || |||||||||||||||||||||| ||||| |||| ||||||||| |
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| T |
36985330 |
gaagtacttagtctctatgctattatttggatgttgcaggatattcctgtcatacctaaaattgggccaagtcaaaatgaatcatcagcctcagtggaaa |
36985231 |
T |
|
| Q |
339 |
ccaatgtaacagcagaaagaaacagcgctggtggagaggttcctcagagttct |
391 |
Q |
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|||| | ||||| ||| | |||| ||||||||||||||||||||||||||| |
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| T |
36985230 |
ccaaaggaacagtagagggggacagggctggtggagaggttcctcagagttct |
36985178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 178 - 416
Target Start/End: Complemental strand, 36984742 - 36984513
Alignment:
| Q |
178 |
tatgttgaaaatgttcaaaaacagtgtgcgtattcctccgattatat-tggttggcttgcaggaagtacttggtctctatgctaatacttggatgttgca |
276 |
Q |
| |
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||||||||||||||||||||| || |||||| ||| ||||||| |||||||||||| |||||| || ||||||||||||||| ||||| || ||| |
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| T |
36984742 |
tatgttgaaaatgttcaaaaa----atgtgtattcttccaattatatcgggttggcttgcatgaagtatttagtctctatgctaatatttggaggtggca |
36984647 |
T |
|
| Q |
277 |
ggatattcctgtcttgccgaaaattgggccaagtcaaaatgcatcattagccacagtggaaaccaatgtaacagcagaaagaaacagcgctggtggagag |
376 |
Q |
| |
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|||||| | || |||| |||||| ||||||||| ||||||||| | |||||||||||||||||||| ||||||||| || ||| | ||||| |||| |
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| T |
36984646 |
ggatatcc---tcatgcctaaaatttggccaagtc-aaatgcatcgtcagccacagtggaaaccaatggaacagcagagtgacaca--gttggtgtagag |
36984553 |
T |
|
| Q |
377 |
gttcctcagagttctacttctacacagaaggaagtgcaga |
416 |
Q |
| |
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| T |
36984552 |
gttccacagagttctactattgcgcaaaaggaagtgcaga |
36984513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 255 - 381
Target Start/End: Complemental strand, 36996650 - 36996524
Alignment:
| Q |
255 |
atgctaatacttggatgttgcaggatattcctgtcttgccgaaaattgggccaagtcaaaatgcatcattagccacagtggaaaccaatgtaacagcaga |
354 |
Q |
| |
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|||| |||| ||||||||| ||||||||||||||| | || ||||||||||||||||||||||||||| || |||||||||||| || | ||||||||| |
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| T |
36996650 |
atgcaaatatttggatgtttcaggatattcctgtcattcctgaaattgggccaagtcaaaatgcatcatcagtcacagtggaaactaaaggaacagcaga |
36996551 |
T |
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| Q |
355 |
aagaaacagcgctggtggagaggttcc |
381 |
Q |
| |
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|| |||| |||||||||||| |||| |
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| T |
36996550 |
gagtgacagagctggtggagagtttcc |
36996524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 352
Target Start/End: Complemental strand, 36979168 - 36979088
Alignment:
| Q |
272 |
ttgcaggatattcctgtcttgccgaaaattgggccaagtcaaaatgcatcattagccacagtggaaaccaatgtaacagca |
352 |
Q |
| |
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|||||||||| ||||||| |||| ||||||| | |||||||||||||||||| ||||||||| ||||| || | ||||||| |
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| T |
36979168 |
ttgcaggataatcctgtcatgcctaaaattgcgtcaagtcaaaatgcatcatcagccacagtagaaactaaaggaacagca |
36979088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 413
Target Start/End: Complemental strand, 36979937 - 36979889
Alignment:
| Q |
365 |
gctggtggagaggttcctcagagttctacttctacacagaaggaagtgc |
413 |
Q |
| |
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||||||||||||||||||| |||||||||| |||||||||||||||||| |
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|
| T |
36979937 |
gctggtggagaggttcctccgagttctactgctacacagaaggaagtgc |
36979889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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