View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9800_high_7 (Length: 337)
Name: NF9800_high_7
Description: NF9800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9800_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 324
Target Start/End: Complemental strand, 7298811 - 7298506
Alignment:
| Q |
19 |
ctcaagactcagagaacgctaacaattcctcgccaacaaggtcgtaacattggccttaacttttgcagcgagagttgaactcacacccttacagaatttg |
118 |
Q |
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| T |
7298811 |
ctcaagactcagagaacgccaacaattcctcgccaacaaggtcgtaacattggccttaacttttgcagcgagagttgaactcacacccttacagaatttg |
7298712 |
T |
|
| Q |
119 |
cgccaaatccttgccgactggaccaaccttcattgacagctttaacaattttgttaactttcatttatattactcttaagactgtttgatttggagaatt |
218 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7298711 |
cgccaaatccttcccgactggaccaaccttcattgacagctttaacaattttgttaactttcatttatattactcttaagactgtttgatttggagaatt |
7298612 |
T |
|
| Q |
219 |
aggtgannnnnnnnagagtggtgtaatttgaaattcagaaagccagcatgtagtccgaaaacgcgactgagagagaataaagtaatagaaaaagtcacac |
318 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7298611 |
aggtgattttttttagagtggtgtaatttgaaattcagaaagccagcatgtagtccgaaaacgcgactgagagagaataaagtaatagaaaaagtcacac |
7298512 |
T |
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| Q |
319 |
tcgtct |
324 |
Q |
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|||||| |
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| T |
7298511 |
tcgtct |
7298506 |
T |
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