View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9800_low_1 (Length: 572)
Name: NF9800_low_1
Description: NF9800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9800_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 21 - 544
Target Start/End: Complemental strand, 35856053 - 35855512
Alignment:
| Q |
21 |
acagctatctcttctttagaattttgatggacacaatgttgttccatatcaaacctagataaaaattacatgacattattattatta------atacata |
114 |
Q |
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| T |
35856053 |
acagctatctcgtctttagaattttgatggacacaatgttgttccatatcaaacctagataaaaattacatgacattattattattattaataatacata |
35855954 |
T |
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| Q |
115 |
catacaaatagcaaataaattattat--------gcttat--------atcttaagaacttatactcactttgatccattcaatgtgtgctctgaaggtg |
198 |
Q |
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| T |
35855953 |
catacaaatagcaaataaattattaaaagggtgagtttatttatgcttatcttaagaacttatacccactttgatccattcaatgtgtgctctgaaggtg |
35855854 |
T |
|
| Q |
199 |
tatgccaatgacattgtattagtttgtagtaagttccatttagattaagcttacctgcataacctttccattggagctgtcgaaacattaagtacgtacg |
298 |
Q |
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| T |
35855853 |
tatgccaatgacattgtattagtttgtagtaagttccatttagattaagcttacctgcataacctttccattggagctgtcgaaacattaagcacgta-- |
35855756 |
T |
|
| Q |
299 |
tatattagtctccttaagcaaaatgtgtatttataattgtttaattaaaaatgcacttagtggcttaccatgacatcattaaacctattctttaggaaag |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35855755 |
--tattagtctccttaagcaaaatgtgtatttataattgtttaattaaaaatgcacttagtggcttaccatgacatcattaaacctattctttaggaaag |
35855658 |
T |
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| Q |
399 |
caggacctagtttgtaatctttttcaagtttaccaagttgaggaagttcttgcacccttttgtttaggatatcaattggagattgtaattttccattccc |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35855657 |
caggacctagtttgtaatctttttcaagtttaccaagttgaggaagttcttgcacccttttgtttaggatatcaattggagattgtaattttccattccc |
35855558 |
T |
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| Q |
499 |
acaaagtttccattctggtttcagattcccccaattctctgctcct |
544 |
Q |
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| T |
35855557 |
acaaagtttccattctggtttcagattcccccagttctctggtcct |
35855512 |
T |
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