View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9800_low_11 (Length: 343)
Name: NF9800_low_11
Description: NF9800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9800_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 62 - 227
Target Start/End: Original strand, 34354238 - 34354417
Alignment:
| Q |
62 |
gaggaagattgtttgtttcaagagtagtctcacatttgatggaaatgtcaaaagtag---------------aaaaagtggatgtttgtatatgtgaaat |
146 |
Q |
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| T |
34354238 |
gaggaagattgtttgtttcaagagtagtctcacatttgatggaaatgtcaaaagtagaaaaagtggatgtagaaaaagtggatgtttgtatatgtgaaat |
34354337 |
T |
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| Q |
147 |
ggtgaagatgcattatttctctaataatggttgcttttaaactcaatataaattatcttcaaactcctctaataactcaac |
227 |
Q |
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| T |
34354338 |
ggtgaagatgcattatttctctaataatggttgctttt-aactcaatataaattatcttcaaactcctctaataactcaac |
34354417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34354133 - 34354198
Alignment:
| Q |
1 |
gtgttatgttgagagcaagcaacgacagggtaagtacatatgaacgaaaaaacttccatttgagga |
66 |
Q |
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| T |
34354133 |
gtgttatgttgagagcaagcaacgacggggtaagtacatatgaatgaaaaaacttctatttgagga |
34354198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 327
Target Start/End: Original strand, 34354482 - 34354516
Alignment:
| Q |
293 |
aataagagtgaagtaatagatgtaataggttggtg |
327 |
Q |
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| T |
34354482 |
aataagagtgaagtaatagatgtaataggttggtg |
34354516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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