View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9800_low_19 (Length: 250)
Name: NF9800_low_19
Description: NF9800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9800_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 36606271 - 36606510
Alignment:
| Q |
1 |
agatggcgacattctccatgcttgggcaataaactgacataaagattacaaatgacattatccatgcttgatataaaacacttataatgtgaaggtatgt |
100 |
Q |
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| T |
36606271 |
agatggcgacattctccaagcttgggcaataaacggacataaagattacaaatgacattctccatgcttgatataaaacacttataatgtgaaggtatgt |
36606370 |
T |
|
| Q |
101 |
attgtagagatcattttggccatgaagcaaaagtaggtatataacacgagcatggagaatgctagccacatgtagtgatttgagatgacctgaccagtca |
200 |
Q |
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| T |
36606371 |
attgtatagatcattttggccatgaagcaaaagtaggtatataacaggagcatggagaatgctaaccacatgtagtgatttgagatgacctgaccagtca |
36606470 |
T |
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| Q |
201 |
tactcattgataatgatttatcatgtgaccttaacctatg |
240 |
Q |
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| T |
36606471 |
tactcattaataatgatttatcatgtgaccttaacttatg |
36606510 |
T |
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Back To:
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Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 27539785 - 27539604
Alignment:
| Q |
1 |
agatggcgacattctccatgcttgggcaataaactgacataaagattacaaatgacattatccatgcttgat------ataaaacacttataatgtgaag |
94 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
27539785 |
agatggcgacattctccatgtttgggcaataaactgacataaagattacaaatgacattatctatgcttgatataattataaaacacttatgatgtgaag |
27539686 |
T |
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| Q |
95 |
gtatgtattgtagagatcattttggccatgaagcaaaagtaggtatataacacgagcatggagaatgctagccacatgtagtga |
178 |
Q |
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| T |
27539685 |
gtatgtatcgtagagatcatattggttgtgaagcaaaagtagg--tatagcaagagcatagtgaatgctaaccacatgtagtga |
27539604 |
T |
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