View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9800_low_2 (Length: 537)
Name: NF9800_low_2
Description: NF9800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9800_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 21 - 525
Target Start/End: Complemental strand, 2786705 - 2786201
Alignment:
| Q |
21 |
atttatgctcctgttctcgtgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctatatccttttccggtggtggtttta |
120 |
Q |
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| T |
2786705 |
atttattctcctgttctcgtgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctatatccttttccggtggtggtttaa |
2786606 |
T |
|
| Q |
121 |
atgacaccgctgtcgctgaagggcttgctgaagctttgatgatgttctccccgtctcaaagtgaaagccctaatcaaaagaatgttgatatgccaatgca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2786605 |
atgacaccgctgtcgctgaagggcttgctgaagctttgatgatgttctccccgtctcaaagtgaaagccctaatcaaaagaatgttgatatgccaatgca |
2786506 |
T |
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| Q |
221 |
ctgtattcttgtggcagccagtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattgactcggaatcaggtaaccagttt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2786505 |
ctgtattcttgtggcagccagtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattgactcggaatcaggtaaccagttt |
2786406 |
T |
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| Q |
321 |
tatgatgctgaagatgttgctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatg |
420 |
Q |
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| T |
2786405 |
tatgatgctgaagatgttgctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatg |
2786306 |
T |
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| Q |
421 |
ctggagctgtcaatccacctgttgatgcgaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtccttccggaacacc |
520 |
Q |
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| T |
2786305 |
ctggagctgtcaatccaccggttgatgctaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtccttccggaacaac |
2786206 |
T |
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| Q |
521 |
aaact |
525 |
Q |
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||||| |
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| T |
2786205 |
aaact |
2786201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 36 - 161
Target Start/End: Original strand, 22515971 - 22516096
Alignment:
| Q |
36 |
ctcgtgcaacgttctggctggacaagagatccagaagttttcttagattggttatcatctatatccttttccggtggtggttttaatgacaccgctgtcg |
135 |
Q |
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|||||||||||| |||||||||||||||| ||||| ||||||||| | ||| || ||||||| | ||||| |||||||||||||||||| | ||| | | |
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| T |
22515971 |
ctcgtgcaacgtactggctggacaagagacccagatgttttcttacagtggctagaatctataccattttctggtggtggttttaatgacgcagctattg |
22516070 |
T |
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| Q |
136 |
ctgaagggcttgctgaagctttgatg |
161 |
Q |
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| T |
22516071 |
ctgaagggcttgctgaagctctgatg |
22516096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 277
Target Start/End: Original strand, 22517146 - 22517262
Alignment:
| Q |
161 |
gatgttctccccgtctcaaagtgaaagccctaatcaaaagaatgttgatatgccaatgcactgtattcttgtggcagccagtaatccttatccattgaag |
260 |
Q |
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||||||| |||| |||||||||| | ||| ||||| ||||||| |||| | ||||||||||| ||||||||||||||||||||||| |||||| || |
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| T |
22517146 |
gatgttccccccttctcaaagtggaggcctaaatcagcagaatgtggatacgaacatgcactgtatccttgtggcagccagtaatccttacccattgcag |
22517245 |
T |
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| Q |
261 |
agaccaatatatgttcc |
277 |
Q |
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| T |
22517246 |
acaccggtatatgttcc |
22517262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 421
Target Start/End: Original strand, 22517462 - 22517521
Alignment:
| Q |
362 |
tatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgc |
421 |
Q |
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|||||||||||| ||| ||||||||| | | ||||||||||| ||||||||||||||||| |
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| T |
22517462 |
tatttctctatcggtcgtctgcccaaaacaacttcccaaaattaaagccatctacaatgc |
22517521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 356
Target Start/End: Original strand, 22517280 - 22517356
Alignment:
| Q |
280 |
agaagaatgaatccattgactcggaatcaggt-aaccagttttatgatgctgaagatgttgctaaagcatttccgcag |
356 |
Q |
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|||||| ||||||||||||||| || || || |||||||| ||||||||||||| |||||||||||| ||||||||| |
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| T |
22517280 |
agaagactgaatccattgactca-aaccaagtgaaccagttatatgatgctgaagctgttgctaaagcgtttccgcag |
22517356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 507
Target Start/End: Original strand, 22518232 - 22518281
Alignment:
| Q |
458 |
tcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtc |
507 |
Q |
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|||| |||| |||||||||||||| ||||||||||||| ||||||||||| |
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| T |
22518232 |
tcttattttaatatcagaaggttttagggaagcccgcagtgccttgagtc |
22518281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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