View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9800_low_20 (Length: 247)
Name: NF9800_low_20
Description: NF9800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9800_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 7459734 - 7459976
Alignment:
| Q |
1 |
tagatgctggatggagggacctatagaaagaagttgattttatgatttgtaatttgccacgcatggaagtctcaaatctaaatttt-cactcatctcaag |
99 |
Q |
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| T |
7459734 |
tagatgctggatggagggacctatagaaagaagttgattttatgatttgtaatttgccacgcatggaagtctcaaatctaaatttttcactcatctcaag |
7459833 |
T |
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| Q |
100 |
tcacgcatgcctttaaacataaaacaatgctagaattagaaaagctaagccatatgagtgtggcttaggtgaaacatttgagtgtagtaccacccaattg |
199 |
Q |
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| T |
7459834 |
tcacgcatgcctttaaccataaaacaatgctagaattagaaaagctaagccatatgagtgtggcttaggtgaaaaatttgagtgtagtaccacccaattg |
7459933 |
T |
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| Q |
200 |
gacaacaaatcaaagagccttacattttccaaatccctatgct |
242 |
Q |
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| T |
7459934 |
gacaacaaatcaaagagccttacattttccaaatccttatgct |
7459976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 80 - 242
Target Start/End: Original strand, 7444536 - 7444698
Alignment:
| Q |
80 |
aaattttcactcatctcaagtcacgcatgcctttaaacataaaacaatgctagaattagaaaagctaagccatatgagtgtggcttaggtgaaacatttg |
179 |
Q |
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|||| |||||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7444536 |
aaatcttcactgatctcgagccacgcatgcctttaaccataaaacaatgctagaattagaaaagctaagccatatgagtgtggcttaggtgaaacatttg |
7444635 |
T |
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| Q |
180 |
agtgtagtaccacccaattggacaacaaatcaaagagccttacattttccaaatccctatgct |
242 |
Q |
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| T |
7444636 |
agtgtagtaccacccaattgggcaacaaattaaagtggcttatattttccaaatccatatgct |
7444698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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