View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9800_low_22 (Length: 239)

Name: NF9800_low_22
Description: NF9800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9800_low_22
NF9800_low_22
[»] chr7 (2 HSPs)
chr7 (134-223)||(36605828-36605917)
chr7 (3-72)||(36605979-36606048)
[»] chr4 (1 HSPs)
chr4 (141-224)||(32649626-32649708)


Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 36605917 - 36605828
Alignment:
Q  134 ctaattcacaaacgactgaactgaatctcaatcaaatagtggaacatcattttgattctacaatctattagttttcattcctcaaatttt 223  Q
    |||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36605917 ctaattgacaaacgactgaactgaatctcaatcaaatagtaaaacatcattttgattctacaatctattagttttcattcctcaaatttt 36605828  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 36606048 - 36605979
Alignment:
Q  3 catctcatgccattttatgtagagttggggcattttatgtacgacaaaaatgttggagaagtgttaatgc 72  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||    
T  36606048 catctcatgccattttatgtagagttggggcattttctgtatgacaaaaatgttgaagaagtgttaatgc 36605979  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 32649626 - 32649708
Alignment:
Q  141 acaaacgactgaactgaatctcaatcaaatagtggaacatcattttgattctacaatctattagttttcattcctcaaattttt 224  Q
    ||||| || |||||||||| ||||||||| || ||||||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  32649626 acaaaagaatgaactgaatgtcaatcaaacag-ggaacataattttcattctataatctattagttttcattcctcaaattttt 32649708  T

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