View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9800_low_3 (Length: 466)
Name: NF9800_low_3
Description: NF9800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9800_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 237 - 452
Target Start/End: Complemental strand, 18045640 - 18045425
Alignment:
| Q |
237 |
ttatgcaggggaactgcctctagtaacttctatctatggagcttctgaagggttcatagctgcaaatgttaaccctgaacttccccctgaattggcaact |
336 |
Q |
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| T |
18045640 |
ttatgcaggggaactgcctctagtgacttctatctacggagcttctgaagggttcatagctgcaaatgttaaccctaaacttccccctgaatttgcaact |
18045541 |
T |
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| Q |
337 |
tatgtcgtgtttcctcaaaatggatactttgagttcattcctctcactcagcttaacaacgatggtactttcctttgtgctgatcctcagccagtgggac |
436 |
Q |
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| T |
18045540 |
tatgccgtgtttcctcaaaatggatactttgagttcattcctctcactcagcttaacaacgatggtactttcctttgtgctgatcctcagccaatgggac |
18045441 |
T |
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| Q |
437 |
tcactgaggtgaaggt |
452 |
Q |
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| T |
18045440 |
tcactgaggtgaaggt |
18045425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 18045689 - 18045636
Alignment:
| Q |
12 |
agagaaggggttcttactagcagaatcacagttccatctattcgaatggttatg |
65 |
Q |
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| T |
18045689 |
agagaaggggttctaactagcagaatcacggttccatctattcgaatggttatg |
18045636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 15 - 452
Target Start/End: Complemental strand, 13979996 - 13979568
Alignment:
| Q |
15 |
gaaggggttcttactagcagaatcacagttccatctattcgaatggttatgtctaaattgctcaaaccaaaccgagaattagctaacataatccacnnnn |
114 |
Q |
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| T |
13979996 |
gaaggagttcttagtagtagagtcacagatccatcgattcgaatc--tatgtctaaattgctcaaaccaaatccagaattagctgacataatccacaaaa |
13979899 |
T |
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| Q |
115 |
nnntgtatagggatgaagatgaacaactgctatggtttgataccagagttgtttcctaatgctaaatacattttcggaatcatgagcgggtcaatggagc |
214 |
Q |
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| T |
13979898 |
aa-tgtctagggttgaata------attggtatggtttgttaccagagttgtttcctaatgcgaagtacatttatggaatcatgacggggtcgatggagc |
13979806 |
T |
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| Q |
215 |
agtatataggaaaattcaggcattatgcaggggaactgcctctagtaacttctatctatggagcttctgaagggttcatagctgcaaatgttaaccctga |
314 |
Q |
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| T |
13979805 |
catatttaggaaagttgaggcactatgcaggagagttacctttagtgacttctatctatggagcttctgaagggttcatagctgcaaatattaaccctaa |
13979706 |
T |
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| Q |
315 |
acttccccctgaattggcaacttatgtcgtgtttcctcaaaatggatactttgagttcattcctctcactcagcttaacaacgatggtactttcctttgt |
414 |
Q |
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| T |
13979705 |
acttccccttgaattggcaacctatgttttgtttcctcaaaatggatactttgagttcattcctctcacacaggttaagaatgagggtactgagctttgt |
13979606 |
T |
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| Q |
415 |
gctgatcctcagccagtgggactcactgaggtgaaggt |
452 |
Q |
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| T |
13979605 |
gttgatcctcatccagtgggactcactgaggtgaaggt |
13979568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 12 - 446
Target Start/End: Original strand, 48367610 - 48368037
Alignment:
| Q |
12 |
agagaaggggttcttactagcagaatcacagttccatctattcgaatggttatgtctaaattgctcaaaccaaaccgagaattagctaacataatccacn |
111 |
Q |
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| T |
48367610 |
agagaaggtgttcttagtagcagagtcacggttccctccattcgaactgctatgtctaaattgctcaaaccaaatccagaattagcgaacataatccaca |
48367709 |
T |
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| Q |
112 |
nnnnnntgtatagggatgaagatgaacaactgctatggtttgataccagagttgtttcctaatgctaaatacattttcggaatcatgagcgggtcaatgg |
211 |
Q |
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| T |
48367710 |
aaaga-tgtatagg-attaag-----caactggtatggtttgataccggagctttttccgaatgcaaagtacatttatggcattatgacaggttctatgg |
48367802 |
T |
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| Q |
212 |
agcagtatataggaaaattcaggcattatgcaggggaactgcctctagtaacttctatctatggagcttctgaagggttcatagctgcaaatgttaaccc |
311 |
Q |
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| T |
48367803 |
aaccatatttggtaaaactgaggcactatgcaggggtgctacctttgtgtactgctgactatggagcttctgaagggtggattgctgcaaatgttaaccc |
48367902 |
T |
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| Q |
312 |
tgaacttccccctgaattggcaacttatgtcgtgtttcctcaaaatggatactttgagttcattcctctcactcagcttaacaacgatggtactttcctt |
411 |
Q |
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| T |
48367903 |
aaaaattccacctgaattggcaacttacgccgtgcttcctcaaattggttactttgagttcattcctctcacacagcttgagaatgaaaatactttcctt |
48368002 |
T |
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| Q |
412 |
tgtgctgatcctcagccagtgggactcactgaggt |
446 |
Q |
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| T |
48368003 |
tgtgttaatcctcagccagtgggactcactgaggt |
48368037 |
T |
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