View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9800_low_4 (Length: 462)
Name: NF9800_low_4
Description: NF9800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9800_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 6240087 - 6239845
Alignment:
| Q |
18 |
agctaaatgattgatgactcatgcattctaacaaactagagtgagtcagcaacaatcattgatacaaaaggaatattctaaacatcaatctagaaggtct |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6240087 |
agctaaatgattggtgactcatgcattctaacaaactagagtgagtcagcaacaaacattgatacaaaaggaatattctaaacatcattctagaaggtct |
6239988 |
T |
|
| Q |
118 |
gatcttatcattttagtacagctgatatccattcagcctcttgggtttctgcttgtttcgtttgggcctaattctcttgataggtccaacaggttcctct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6239987 |
gatcttatcattttagtacagctgatatccattcagcctcttgggtttctgcttgtttcgtttgggcctaattctcttgacaggtccaacaggttcctct |
6239888 |
T |
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| Q |
218 |
tcacctaattcatcatctccctcttctggctcagtgttcattt |
260 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6239887 |
tcagctaattcatcatctccctcttctggctcagtgttcattt |
6239845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 6244826 - 6244584
Alignment:
| Q |
18 |
agctaaatgattgatgactcatgcattctaacaaactagagtgagtcagcaacaatcattgatacaaaaggaatattctaaacatcaatctagaaggtct |
117 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6244826 |
agctaaatgattggtgactcatgcattctaacaaactagagtgagtcagcaacaaacattgatacaaaaggaatattctaaacatcattctagaaggtct |
6244727 |
T |
|
| Q |
118 |
gatcttatcattttagtacagctgatatccattcagcctcttgggtttctgcttgtttcgtttgggcctaattctcttgataggtccaacaggttcctct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6244726 |
gatcttatcattttagtacagctgatatccattcagcctcttgggtttctgcttgtttcgtttgggcctaattctcttgacaggtccaacaggttcctct |
6244627 |
T |
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| Q |
218 |
tcacctaattcatcatctccctcttctggctcagtgttcattt |
260 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6244626 |
tcagctaattcatcatctccctcttctggctcagtgttcattt |
6244584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 387 - 451
Target Start/End: Original strand, 22470107 - 22470171
Alignment:
| Q |
387 |
aaactatcgttttgttaggtcaggtaatgatattgctacatctcataactagttagttaatctct |
451 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22470107 |
aaactatcattttgttaggtcagataatgatattgctacatctcataactagtcagttaatctct |
22470171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 22470048 - 22470103
Alignment:
| Q |
262 |
aggtacataggttcaagactttcttctaaagtaattacaagtctctcgtaatagag |
317 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
22470048 |
aggtacataggttcaagactttattctaaagtaactacaagtctctcgtaatagag |
22470103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 17094890 - 17095132
Alignment:
| Q |
18 |
agctaaatgattgatgactcatgcattctaacaaactagagtgagtcagcaacaatcattgatacaaaaggaatattctaaacatcaatctagaaggtct |
117 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17094890 |
agctaaatgattggtgactcatgcattctaacaaactagagtgagtcaacaacaaacattgatacaaaaggaatattctaaacatcattctagaaggtct |
17094989 |
T |
|
| Q |
118 |
gatcttatcattttagtacagctgatatccattcagcctcttgggtttctgcttgtttcgtttgggcctaattctcttgataggtccaacaggttcctct |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17094990 |
gatcttatcattttagtacagctgatatccattcagcctcttgggtttctgcttgtttcgtttgggcctaattctcttgacaggtccaacaggttcctct |
17095089 |
T |
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| Q |
218 |
tcacctaattcatcatctccctcttctggctcagtgttcattt |
260 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17095090 |
tcagctaattcatcatctccctcttctggctcagtgttcattt |
17095132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 17093398 - 17093481
Alignment:
| Q |
18 |
agctaaatgattgatgactcatgcattctaacaaactagagtgagtcagcaacaatcattgatacaaaaggaatattctaaaca |
101 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17093398 |
agctaaatgattggtgactcatgcattctaacaaactagagtgagtcagcaacaaacattgatacaaaaggaatattctaaaca |
17093481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 24007673 - 24007624
Alignment:
| Q |
272 |
gttcaagactttcttctaaagtaattacaagtctctcgtaatagagtcct |
321 |
Q |
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|||||||||||| ||||||| |||||||| |||||||||| |||| |||| |
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| T |
24007673 |
gttcaagactttattctaaaataattacaggtctctcgtattagactcct |
24007624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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