View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9800_low_5 (Length: 447)
Name: NF9800_low_5
Description: NF9800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9800_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 1858842 - 1859145
Alignment:
| Q |
17 |
aagaaaagaaggaaccagctcttacgatgcattaatgatatgtgtcttttaactaacttaaaaaaccactctttcaaatttaaatatttcttgtagtttt |
116 |
Q |
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| T |
1858842 |
aagaaaagaaggaaccaactcttacgatacattaatgatgtgtgtcttttaactaacttaaaaaaccaccctttcaaatttaaatatttcttgtagtttt |
1858941 |
T |
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| Q |
117 |
tgaattctgaaattcgttgacttcccaaacataattgtccttttttaaaacttctcttgcccgttccttgtgtgtaattagttatttgaactttaaatat |
216 |
Q |
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| T |
1858942 |
tgaattctgaaattcgttgacttcccaaacataattgtccttttttaaaacttctcttgcatgttccttatgtgtaattagttatttgaactttaaatat |
1859041 |
T |
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| Q |
217 |
ttataaaccttcgattactgccaacgttgttttccttcgaatactggtctgttaaggttgatttcgaatattcgatgccccaaaatgttaattcttgcat |
316 |
Q |
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| T |
1859042 |
ttataaaccttcgattactgccaacgttgttttccttcgaatactggtcttttaaggttgatttcgaatattcgatgccccaaaatgttaattcttgcat |
1859141 |
T |
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| Q |
317 |
agta |
320 |
Q |
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|||| |
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| T |
1859142 |
agta |
1859145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 352 - 431
Target Start/End: Original strand, 1865046 - 1865125
Alignment:
| Q |
352 |
agaatgcaactggtaactacacttgtttcatacgtaactagcacatgctattgtctagagatcacctttcttagagtttt |
431 |
Q |
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| T |
1865046 |
agaatgcaactagtaactacacttgtttcatacgtaactagcacatgctattgtctagagatcacctttcttagagtttt |
1865125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 291 - 431
Target Start/End: Original strand, 1869060 - 1869192
Alignment:
| Q |
291 |
atgccccaaaatgttaattcttgcatagtaataaaaatagatctacacattaatcaaaataagaatgcaactggta---actacacttgtttcatacgta |
387 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||| |
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| T |
1869060 |
atgctccaaaatgttacttcttgcatagtaataaaaatagatctacacat-----------agaatacaactagtagtaactacacttgtttcatacgta |
1869148 |
T |
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| Q |
388 |
actagcacatgctattgtctagagatcacctttcttagagtttt |
431 |
Q |
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|||||||||||||||||| | || |||||| |||| |||||||| |
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| T |
1869149 |
actagcacatgctattgtgtcgatatcaccattctgagagtttt |
1869192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 1859437 - 1859469
Alignment:
| Q |
317 |
agtaataaaaatagatctacacattaatcaaaa |
349 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
1859437 |
agtaataaaaatagatctacacattaatcaaaa |
1859469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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