View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9800_low_8 (Length: 378)
Name: NF9800_low_8
Description: NF9800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9800_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 45134158 - 45133808
Alignment:
| Q |
11 |
gtgtttacattcaagttagatgaggaaaaattgaaaccgtaagttttcttttggggtttcaaaattgagattttgggtttcttttgaaggtcaggaagtt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45134158 |
gtgtttacattcaagttagatgaggaaaaattgaaaccgtaagttttcttttggggtttcaaaattgagattttgggtttcttttgaaggtcaggaagtt |
45134059 |
T |
|
| Q |
111 |
taaatgaaaaattaagcatgtttattattctttcccaagaatcaggagaaatttatccttcctgcattgtaagtccataaacattgttattcaatttatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45134058 |
taaatgaaaaattaagcatgtttattattctttcccaagaatcaggagaaatttctccttcctgcattgtaagtccataaacattgttattcaatttatt |
45133959 |
T |
|
| Q |
211 |
aagatgaagtaattggtgaaagttgacaaatgatgatttagccgtcattgatatttttctttttaaatgaatgaagatgacattatgacactggattgta |
310 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45133958 |
aagatgaagtaattggtgaaagatgacaaatgatgatttagccgtcattgatatttttctttttaaatgaatgaagatgacattatgacactggattgta |
45133859 |
T |
|
| Q |
311 |
tgtgatagatttctaagatggcttaacccttttacaatatttgcagggtgt |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45133858 |
tgtgatagatttctaagatggcttaacccttttacaatatttgcagggtgt |
45133808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 45134283 - 45134196
Alignment:
| Q |
11 |
gtgtttacattcaagttagatgaggaaaaattgaaaccgtaagttttcttttggggtttcaaaattgagatttt-gggtttcttttga |
97 |
Q |
| |
|
||||||||||| | || ||||| | ||||| |||||| ||||||||| ||||||| |||| ||||| |||||| ||||||||||||| |
|
|
| T |
45134283 |
gtgtttacattggaatttgatgaaggaaaatcgaaaccctaagttttcatttggggcttcacaattgggattttggggtttcttttga |
45134196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University