View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9801_1 (Length: 1094)
Name: NF9801_1
Description: NF9801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9801_1 |
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Alignment Details
Target: chr5 (Bit Score: 960; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 960; E-Value: 0
Query Start/End: Original strand, 1 - 1058
Target Start/End: Original strand, 3705473 - 3706529
Alignment:
| Q |
1 |
cttatgtatgttctctagcatttctttctcataagctatttgttgtttctccaaaaagcttagcactggaacacctccgacactaatgcttgaccataat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3705473 |
cttatgtatgttctctagcatttctttctcataagctatttgttgtttctccaaaaagcttagcactggaacacctccgacactaatgcttgaccataat |
3705572 |
T |
|
| Q |
101 |
gccactgaactgtcaccatgttcccccactatgtatgcctacaatatcaacttacactgataaaatattgagtttactatttgttgatcgtgaccagtgt |
200 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3705573 |
gccactgaactatcaccatgttcccccactatgtatgcctacaatatcaacttaaactgataaaatattgagtttactatttgttgatcgtgaccagtgt |
3705672 |
T |
|
| Q |
201 |
tagttctaaattgcgttctgcaattgctcttgcattgcatgtttggtattatagtgagtttgctaaaatcacggctgcgattttggaaaaactattcact |
300 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3705673 |
tagttctaaattgcattctgcaattgctcttgcattgcatgtttggtattatagtgagtttgctaaaatcacggctgcgattttggaaaaactattcact |
3705772 |
T |
|
| Q |
301 |
gtgataccaaacatgtgcgcaagtgcaatggggaatgatcgacgatatatcnnnnnnnaaagcaataaggaaaaaagttgtacctgcacatcttgagcat |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3705773 |
gtgataccaaacatgtgcgcaagtgcaatggggaatgatcgacgatatat-tttttttaaagcaataaggaaaaaagttgtacctgcacatcttgagcat |
3705871 |
T |
|
| Q |
401 |
taacatcaagatgatcagcaataaggaaacggaagcgagaggaatccaaattagtgcctgaaccaatgacgcggttggaggggaaaccagaaagtttcca |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3705872 |
taacatcaagatgatcagcaataaggaaacggaagcgagaggaatccaaattagtgcctgaaccaatgacgcggttggaggggaaaccagaaagtttcca |
3705971 |
T |
|
| Q |
501 |
agcaatgtaagtgagcacatcaacaggattggaaacaattagaagaacacaatgaggagagtaacgaaccaaaggcggtataannnnnnnaaacaaagct |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
3705972 |
agcaatgtaagtgagcacatcaacaggattggaaacaattagaagaacacaatgaggagagtaacgaaccaaaggcggtataatttttttaaacaaagct |
3706071 |
T |
|
| Q |
601 |
acattcctttgtagcaaattcaatctggactcgccattaatctggcgagccccagcagtgacgatgcagaggtcagaccccatcgtcactgaatagtcag |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
3706072 |
acattcctttgtagcaaattcaatctggactcgccattaatctgacgagccccagcagtgacgatgcagaggtcggaacccatcgtcactgaatagtcag |
3706171 |
T |
|
| Q |
701 |
tggaggcctggatcttagtacgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaacaagaacaag |
800 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3706172 |
tggaggcctggatcttagtgcgggggaggaaggccgcagcatgttgtagatccagcatctcacctcgtagtttgtcaggaatggcgtcaacaagaacaag |
3706271 |
T |
|
| Q |
801 |
ctcgtcgactaggtcttgtgttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgtttggttggagaa |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3706272 |
ctcgtcgactaggtcttgtgttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgtttggttggagaa |
3706371 |
T |
|
| Q |
901 |
ggaggtgaggcatgttggatggacttgaagaaggattgagttaggtccaaaccacctggtcccaatgatgaacctgatatgcttttgtgcatttggattt |
1000 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3706372 |
ggaggtgaggcatgttggatggacttgaagaaggattgagttaggtccaaaccatctggtcccaatgatgaacctgatatgcttttgtgcattttgattt |
3706471 |
T |
|
| Q |
1001 |
gcttgtgctgatttgagtaaaggtaaatgcgaagtgtgtgatgggaaaatttgatttg |
1058 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3706472 |
gcttgtgctgatttgagtaaaggtaaatgtgaagtgtgtgatgggaaaatttgatttg |
3706529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 721 - 884
Target Start/End: Complemental strand, 41765310 - 41765147
Alignment:
| Q |
721 |
cgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaacaagaacaagctcgtcgactaggtcttgtg |
820 |
Q |
| |
|
||||||||||| || ||||| ||||| ||||| ||||| || || || |||||||| || || |||| || | || |||||||| |||||||| | |
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| T |
41765310 |
cgggggaggaaagcagcagcgtgttgaagatcaagcatttcgccgcggagtttgtcgggtttgttgtcgacgatgacgagctcgtctgtgaggtcttgag |
41765211 |
T |
|
| Q |
821 |
ttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtg |
884 |
Q |
| |
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|||||||||| ||||| || ||||| || |||||||| |||||||| || |||||||||||||| |
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|
| T |
41765210 |
ttaggatggtctgagcaatggccatgccgacgttgccggcgccgatgacggagatcttgttgtg |
41765147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 41766606 - 41766487
Alignment:
| Q |
21 |
tttctttctcataagctatttgttgtttctccaaaaagcttagcactggaacacctccgacactaatgcttgaccataatgccactgaactgtcaccatg |
120 |
Q |
| |
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||||||||||||| || || ||||||||||||||||| || ||||| |||| ||| || | || || || ||||| ||||| |||||||| || ||||| |
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| T |
41766606 |
tttctttctcatatgcaatctgttgtttctccaaaaaactcagcacgggaataccaccaatgctgatactagaccacaatgctactgaactatccccatg |
41766507 |
T |
|
| Q |
121 |
ttcccccactatgtatgcct |
140 |
Q |
| |
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||||| |||||| |||||| |
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| T |
41766506 |
ctcccctactatgcatgcct |
41766487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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