View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9801_3 (Length: 614)
Name: NF9801_3
Description: NF9801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9801_3 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 192 - 533
Target Start/End: Complemental strand, 7070323 - 7069980
Alignment:
| Q |
192 |
ttttctaacttgtgtttaatc-ttcaagtttaatggatgaatactgttagcataaaacaattttacaccgacatctaatcaaaagtcatcatttttacat |
290 |
Q |
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| T |
7070323 |
ttttctaacttgtgtttaatccttcaagtttaatggatgaatacttttagcataaaacaattttacaccgacatctaatcaaaagtcatcatttttacat |
7070224 |
T |
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| Q |
291 |
cacactattaatttcaaactaatcatagaaaattggagggacgtagcaaaaaatcggattttcattgaaggtcaatgtaaaattgttttacaccaccaat |
390 |
Q |
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| T |
7070223 |
cacactattaatttcaaactaatcatagaaaatt-gaaggacgtagcaaaaaatcggattttcattgaaggtcaatgtaaaattgttttacaccaccact |
7070125 |
T |
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| Q |
391 |
acatgaac-ttaattccttgatgtttttctcgtttgaaagttttatatcacactcctttcatccttatttataagactcttttcaaatg-tttgaatatt |
488 |
Q |
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| T |
7070124 |
acatgaacattaattccttgatgtttttctcgtttgaaagttttatatcacactcctttcatccctatttataagactcttttcaaatgttttcaatatt |
7070025 |
T |
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| Q |
489 |
tttctaaatataagatgatttgtaaatttctaaatacatttattc |
533 |
Q |
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| T |
7070024 |
tttctaaatataagatgatttgtaaatttctaaatacatttattc |
7069980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 7071394 - 7071264
Alignment:
| Q |
29 |
atcaacaacgttaaaggttgttgagacactatatgtttctgaaagttctaccttgtaagcattgttgcttattttcttaactattttgattttgaaggga |
128 |
Q |
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| T |
7071394 |
atcaacaacgttaaaggttgttgagacactatatgtttctgaaagtt-----ttgtaagaattgtcgctgattttcttaactattttgattttgaatgga |
7071300 |
T |
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| Q |
129 |
ccatcaactcttggagacaatccaacatttggccta |
164 |
Q |
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| T |
7071299 |
ccatcaactcttggagacaatccgacatttggccta |
7071264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 13719526 - 13719610
Alignment:
| Q |
33 |
acaacgttaaaggttgttgagacactatatgtttctgaaagttctaccttgtaagcattgttgcttattttcttaactattttga |
117 |
Q |
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| T |
13719526 |
acaacattgaaggttgctgagacaccataggttcctggaaattctaccttgtaagcattgtcattgatttttttaactattttga |
13719610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 24591 - 24666
Alignment:
| Q |
42 |
aaggttgttgagacactatatgtttctgaaagttctaccttgtaagcattgttgcttattttcttaactattttga |
117 |
Q |
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| T |
24591 |
aaggttgctgagacaccataggttcctggaaattctaccttgtaagcattgtcgttgattttttgaactattttga |
24666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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