View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9801_5 (Length: 416)
Name: NF9801_5
Description: NF9801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9801_5 |
 | |
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| [»] chr4 (4 HSPs) |
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| [»] chr2 (4 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 48963000 - 48963419
Alignment:
| Q |
1 |
tgagggagacagtaaatgtggaggagc-agagaaggcaatggtggggatctgaagcttatgacccaagtcataaacccaggggtatata-----ggtgac |
94 |
Q |
| |
|
||||||||||||||||| ||||| | | || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
48963000 |
tgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgacccaagtcataaacccatgggtatatacagtcggtgat |
48963099 |
T |
|
| Q |
95 |
gatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctgaggtggcaatgtcagtgatg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
48963100 |
gatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctgaggtggcgatgtcagtggtg |
48963199 |
T |
|
| Q |
195 |
gaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcgaaggaagaggggatcggcaaaggaaggagact |
294 |
Q |
| |
|
||||||||||||||||||| |||| |||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48963200 |
gaggacaaagattcaacaccatcaaggaggctg--ttgtttggaggggaagtcgatggtatgaaggcgaaggaagaggggatcggcaaaggaaggagact |
48963297 |
T |
|
| Q |
295 |
tattggtgaagaagtgggcgttggatggaatggtgatgattgtgacttgttggacacgggacgcaaacagagctgctatgtcacccaaaggaatcatatg |
394 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48963298 |
tattggtgaagaagtgggcgttggagggagtggtgatgattgtgacttgttggccacgggacgcaaacagagctgctatgtcacccaaaggaatcatatg |
48963397 |
T |
|
| Q |
395 |
accaggtgcaagatatggaatg |
416 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48963398 |
accaggtgcaagatatggaatg |
48963419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 31 - 416
Target Start/End: Original strand, 48958890 - 48959277
Alignment:
| Q |
31 |
gaaggcaatggtggggatctgaagcttatgacccaagtcataaacccaggggtatat--ag---gtgacgatgcagtcaggtggatccttctccatgaaa |
125 |
Q |
| |
|
|||||| |||||||| || ||||||||||| ||||||||||||||||||||| ||| || | || |||||||||||||||||||||||||||||| |
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|
| T |
48958890 |
gaaggcgatggtgggaatttgaagcttatgggccaagtcataaacccaggggtttatgcagtcagcgattatgcagtcaggtggatccttctccatgaaa |
48958989 |
T |
|
| Q |
126 |
tcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctgaggtggcaatgtcagtgatggaggacaaagattcaacacaatcagggaggc |
225 |
Q |
| |
|
|| ||||| ||| | ||||||||||||| ||||||||||||||| | |||||| || ||| | | ||||||||| ||||||||| | |||||||||| |
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|
| T |
48958990 |
tcgtgaataggttcacggaggagcattgccccgtagtatatcttgccggaggtgtcaccgtcggaggtggaggacatagattcaacgccgtcagggaggc |
48959089 |
T |
|
| Q |
226 |
cgacttgtttggaggggaagtcgacggtatgaaggcgaaggaagaggggatcggcaaaggaaggagacttattggtgaagaagtgggcgttggatggaat |
325 |
Q |
| |
|
| ||||||| |||||| |||| ||| |||||||| ||||||| |||||| || || |||| ||||| |||||||||| |||||| ||| | |
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|
| T |
48959090 |
caacttgttgggagggaaagttgacaaggtgaaggcggaggaagaagggatcaacacttgagagaga---tttggtaaagaagtgggagttggagggagt |
48959186 |
T |
|
| Q |
326 |
ggtgatgattgtgacttgttggacacgggacgcaaacagagctgctatgtcacccaaaggaatcatatgaccaggtgcaagatatggaatg |
416 |
Q |
| |
|
|||||||||||| ||||||||| || |||| |||||||||| ||||||||||| || || |||||||| |||||||| ||||||||||| |
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|
| T |
48959187 |
ggtgatgattgtcacttgttggccatgggatgcaaacagagttgctatgtcacacatggggatcatatgcccaggtgctggatatggaatg |
48959277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 48966151 - 48966206
Alignment:
| Q |
99 |
cagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgc |
154 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||| | |||||||||||||| |
|
|
| T |
48966151 |
cagtcaggtggatctttctccatgaaattctgaattggttcttggaggagcattgc |
48966206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 416
Target Start/End: Original strand, 48966354 - 48966465
Alignment:
| Q |
305 |
gaagtgggcgttggatggaatggtgatgattgtgacttgttggacacgggacgcaaacagagctgctatgtcacccaaaggaatcatatgaccaggtgca |
404 |
Q |
| |
|
||||| |||||| || ||| | |||||||| |||||||||||| || | || ||||| | || ||||||||||| || ||| |||||||| || ||||| |
|
|
| T |
48966354 |
gaagttggcgttagagggagttgtgatgatggtgacttgttggccatgagatgcaaagatagttgctatgtcacacatagggatcatatggcctggtgct |
48966453 |
T |
|
| Q |
405 |
agatatggaatg |
416 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48966454 |
agatatggaatg |
48966465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 95 - 414
Target Start/End: Complemental strand, 12640848 - 12640532
Alignment:
| Q |
95 |
gatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctgaggtggcaatgtcagtgatg |
194 |
Q |
| |
|
|||| |||||||| |||||||||||| ||| || ||| ||| | |||||||||||||| || | |||||||||| |||| || || |||| || |
|
|
| T |
12640848 |
gatgtagtcaggttgatccttctccacgaattctctaatgggttcatggaggagcattgcacctttacatatcttggccatggtgtcagggttagtggtg |
12640749 |
T |
|
| Q |
195 |
gaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcgaaggaagaggggatcggcaaaggaaggagact |
294 |
Q |
| |
|
|||||||| |||||||| | || || || ||||||||| |||||||||||||||||| |||||||| ||||| | |||||| | ||||| |||| | |
|
|
| T |
12640748 |
gaggacaatgattcaacgccgtcgggaagatcgacttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacggatcgacgaaggagagagatt |
12640649 |
T |
|
| Q |
295 |
tattggtgaagaagtgggcgttggatggaatggtgatgattgtgacttgttggacacgggacgcaaacagagctgctatgtcacccaaaggaatcatatg |
394 |
Q |
| |
|
| ||| ||||| ||||||||||| ||| |||||||||| |||||||||||| || |||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12640648 |
t---ggtaaagaaatgggcgttggagggagtggtgatgatcgtgacttgttggccatgggatgcaaacaaagctgctatgtcacccaaaggaatcatatg |
12640552 |
T |
|
| Q |
395 |
accaggtgcaagatatggaa |
414 |
Q |
| |
|
||||||||| ||| |||||| |
|
|
| T |
12640551 |
accaggtgctagaaatggaa |
12640532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 105 - 416
Target Start/End: Original strand, 13441028 - 13441336
Alignment:
| Q |
105 |
ggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgccgtagtatatcttggctgaggtggcaatgtcagtgatggaggacaaag |
204 |
Q |
| |
|
|||||||| |||||||||||||||| ||| | ||| ||||||||||||||||| || ||||| ||||| | ||||||| |||| |||| || |
|
|
| T |
13441028 |
ggtggatctttctccatgaaatcctcaatggatccatggaggagcattgcgccacggtggatcttccaagaggtcatagagtcagtggtggaagacatag |
13441127 |
T |
|
| Q |
205 |
attcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcgaaggaagaggggatcggcaaaggaaggagacttattggtgaa |
304 |
Q |
| |
|
|||||| | ||||||||| ||||||||| |||||| ||||||||||| || | ||| ||||||| || | | || | || |||| || ||| | |
|
|
| T |
13441128 |
attcaatgccttcagggaggtcgacttgttgggagggaaagtcgacggtgtggaagcggaggaagaaggaagccgcggatgagagagattt---ggttag |
13441224 |
T |
|
| Q |
305 |
gaagtgggcgttggatggaatggtgatgattgtgacttgttggacacgggacgcaaacagagctgctatgtcacccaaaggaatcatatgaccaggtgca |
404 |
Q |
| |
|
| | || |||||||| ||| ||||||||||||||||||||||| ||||||| ||||||| || ||||||||||| | ||| |||||||| |||| ||| |
|
|
| T |
13441225 |
ggattgagcgttggagggagtggtgatgattgtgacttgttggccacgggatgcaaacatagttgctatgtcacaaagagggatcatatgtccagatgct |
13441324 |
T |
|
| Q |
405 |
agatatggaatg |
416 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13441325 |
agatatggaatg |
13441336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 13449284 - 13449354
Alignment:
| Q |
198 |
gacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcgaaggaa |
268 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||| |||||||||||| ||||| ||||| |||||||| |
|
|
| T |
13449284 |
gacatagattcaataccttcagggaggccgacttgttgggaggggaagtcaacggtgtgaagacgaaggaa |
13449354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 416
Target Start/End: Original strand, 13462417 - 13462520
Alignment:
| Q |
313 |
cgttggatggaatggtgatgattgtgacttgttggacacgggacgcaaacagagctgctatgtcacccaaaggaatcatatgaccaggtgcaagatatgg |
412 |
Q |
| |
|
||||||| ||| ||||||||| |||||| |||||| ||||||| ||||||| | |||||||||| | ||| |||||||| |||| ||| |||||||| |
|
|
| T |
13462417 |
cgttggagggagtggtgatgactgtgacgtgttggccacgggatgcaaacataattgctatgtcaaaaagagggatcatatgtccagatgctagatatgg |
13462516 |
T |
|
| Q |
413 |
aatg |
416 |
Q |
| |
|
|||| |
|
|
| T |
13462517 |
aatg |
13462520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 13462224 - 13462264
Alignment:
| Q |
117 |
tccatgaaatcctgaattggtccgtggaggagcattgcgcc |
157 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
13462224 |
tccatgaaatcctcaatgggtccatggaggagcattgcgcc |
13462264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 416
Target Start/End: Complemental strand, 12589364 - 12589236
Alignment:
| Q |
288 |
ggagacttattggtgaagaagtgggcgttggatggaatggtgatgattgtgacttgttggacacgggacgcaaacagagctgctatgtcacccaaaggaa |
387 |
Q |
| |
|
|||||||| |||||||||||||||| ||| | ||| ||||| ||||||||||||||||| ||||||| |||||||| | ||| ||||||| | ||| | |
|
|
| T |
12589364 |
ggagacttgttggtgaagaagtgggagttcaagggagtggtggtgattgtgacttgttggccacgggatgcaaacagggttgcaatgtcacatagaggga |
12589265 |
T |
|
| Q |
388 |
tcatatgaccaggtgcaagatatggaatg |
416 |
Q |
| |
|
||||||| ||||||| |||||||||||| |
|
|
| T |
12589264 |
tcatatgcccaggtgatagatatggaatg |
12589236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 416
Target Start/End: Complemental strand, 12482696 - 12482504
Alignment:
| Q |
221 |
gaggccgacttgtttggaggggaagtcgacggtatgaaggcgaaggaagaggggatcggcaaaggaaggagacttattggtgaagaagtgggcgttggat |
320 |
Q |
| |
|
||||||||||| || | |||| ||||||||||| |||||| | ||||| |||| ||| ||||| | | ||| |||||||||||||||| |||||| |
|
|
| T |
12482696 |
gaggccgacttcttggaagggaaagtcgacggtgtgaaggtg---gaagaagggaatggcgaaggaggaattcttgttggtgaagaagtgggtgttggaa |
12482600 |
T |
|
| Q |
321 |
ggaatggtgatgattgtgacttgttggacacgggacgcaaacagagctgctatgtcacccaaaggaatcatatgaccaggtgcaagatatggaatg |
416 |
Q |
| |
|
||| |||||||||||||||| || ||| |||| || |||||||||| ||| || | | || ||| |||||||| |||||||| || |||||||| |
|
|
| T |
12482599 |
ggagtggtgatgattgtgacatgatggccacgtgatgcaaacagagttgcaatcttgcacatagggatcatatgcccaggtgctggaaatggaatg |
12482504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 262
Target Start/End: Complemental strand, 12589539 - 12589372
Alignment:
| Q |
95 |
gatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgcgcc-gtagtatatcttggctgaggtggcaatgtcagtgat |
193 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||||| ||| ||| | |||||||| ||||| | ||| || |||||| |||||||| ||| ||| | |
|
|
| T |
12589539 |
gatgtagtcaggtggatccttctgcatcaaatccccaatgggttcaaggaggagctttgcggctgta-tagatcttgatggaggtggcgtggtcggtggt |
12589441 |
T |
|
| Q |
194 |
ggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaaggcg |
262 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| ||||||||| || ||| | |||||||| |
|
|
| T |
12589440 |
ggaggacaaagattcgacaccgtcagggaggccgacttgtagggaggggaaatctacgatgtgaaggcg |
12589372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 3416680 - 3416579
Alignment:
| Q |
315 |
ttggatggaatggtgatgattgtgacttgttggacacgggacgcaaacagagctgctatgtcacccaaaggaatcatatgaccaggtgcaagatatggaa |
414 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||| || |||| ||||||| ||||||||| ||| | ||| |||||||| | || ||||||||| |||| |
|
|
| T |
3416680 |
ttggagggagtggtgatgattgtgacatgttggccatgggatgcaaacatagctgctatatcagaaagagggatcatatggctagatgcaagataaggaa |
3416581 |
T |
|
| Q |
415 |
tg |
416 |
Q |
| |
|
|| |
|
|
| T |
3416580 |
tg |
3416579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 416
Target Start/End: Original strand, 12541708 - 12541809
Alignment:
| Q |
315 |
ttggatggaatggtgatgattgtgacttgttggacacgggacgcaaacagagctgctatgtcacccaaaggaatcatatgaccaggtgcaagatatggaa |
414 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| || | || ||||||| || |||||| |||| | ||| |||||||| |||| ||| | |||||||| |
|
|
| T |
12541708 |
ttggagggagtggtgatgattgtgacttgttggccatgtgatgcaaacaaagttgctatatcacaaagagggatcatatgtccagatgctaaatatggaa |
12541807 |
T |
|
| Q |
415 |
tg |
416 |
Q |
| |
|
|| |
|
|
| T |
12541808 |
tg |
12541809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 260
Target Start/End: Original strand, 12541593 - 12541668
Alignment:
| Q |
185 |
gtcagtgatggaggacaaagattcaacacaatcagggaggccgacttgtttggaggggaagtcgacggtatgaagg |
260 |
Q |
| |
|
||||||| ||||||||| |||||||| | | ||||||| ||||||||| ||||||||||||||| || |||||| |
|
|
| T |
12541593 |
gtcagtggtggaggacatagattcaatgcctttagggaggtcgacttgttcggaggggaagtcgacagtgtgaagg |
12541668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 28386357 - 28386426
Alignment:
| Q |
309 |
tgggcgttggatggaatggtgatgattgtgacttgttggacacgggacgcaaacagagctgctatgtcac |
378 |
Q |
| |
|
||||| ||||| ||| |||||||||||||||| |||||| |||| || ||||||| || |||||| |||| |
|
|
| T |
28386357 |
tgggcattggagggagtggtgatgattgtgacatgttggccacgtgatgcaaacaaagttgctatatcac |
28386426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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