View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9801_7 (Length: 380)
Name: NF9801_7
Description: NF9801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9801_7 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 30 - 364
Target Start/End: Original strand, 27714300 - 27714645
Alignment:
| Q |
30 |
tagttagacagagttgtaccaagtcccaacccgcaaccaagttctacaactagccagtattgacaatttaactaagctacgagctacaacatttaaatta |
129 |
Q |
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| T |
27714300 |
tagttagaccgagttgtaccaagtcccaacccgcaaccaagttctacaaccagccagtattgacaatttaactaagctacgagctacaacatttaaatta |
27714399 |
T |
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| Q |
130 |
cgtttaacaaacacaacacttgagctttgaagttctaagatgttgcattagtcgtcggcttgatctacaagcctttgacgtctccacctcacatttgccc |
229 |
Q |
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| T |
27714400 |
cgtttaacaaacacaacacttgagctttgaagttctaagatgttgcattagtcgtcggcttgatctacaagcctttgacgtctccacctcatatttgccc |
27714499 |
T |
|
| Q |
230 |
ttttactctctcctaagcttgatttctctaaacttcattattgagtgaatattttcaaatgacgctgcaaggctctatttatattgattatggaaaa--- |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
27714500 |
ttttactctctcctaagcttgatttctctaaacttcattattgagtgaatattttcaaatgacgctgcaagcctctatttata--gattatggaaaagct |
27714597 |
T |
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| Q |
327 |
----------gcgaggtgtctgttctctatacaatcgtttcttcctca |
364 |
Q |
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| T |
27714598 |
cttttgtcgggcgaggtgtctgttctctatacaatcgtttcttcctca |
27714645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 27706976 - 27707061
Alignment:
| Q |
82 |
gccagtattgacaatttaactaagctacgagctacaacatttaaattacgtttaacaaacacaacacttgagctttgaagttctaa |
167 |
Q |
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| T |
27706976 |
gccagtattgacaatttaactaaactatgagctacaacatataaatcacgtttaacaaacacaacacttgagctttgaagttctaa |
27707061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 18435993 - 18436037
Alignment:
| Q |
188 |
cttgatctacaagcctttgacgtctccacctcacatttgcccttt |
232 |
Q |
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| T |
18435993 |
cttgatctacaagcctttgatgtttctacctcacttttgcccttt |
18436037 |
T |
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