View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9801_8 (Length: 365)
Name: NF9801_8
Description: NF9801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9801_8 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 201 - 322
Target Start/End: Original strand, 51994740 - 51994861
Alignment:
| Q |
201 |
tggtagtattaataattgacccccctaatttgagtatataatttcatttgtgatgtttaggaaactacgggaaaaaatatcaacacctgaatcaaaagag |
300 |
Q |
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| T |
51994740 |
tggtagtattaataattaacccccctaatttgagtatataatttcatttgtgctgtttaggaaactacgggaaaaaatatcaacacctgaatcaaaagag |
51994839 |
T |
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| Q |
301 |
actatacaaaacagagcccaac |
322 |
Q |
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| T |
51994840 |
actatacagaacagagcccaac |
51994861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 51994554 - 51994659
Alignment:
| Q |
17 |
cctgtgttcagttccaacaaatttaaggtgcaaaatggcaa-aaaacacgagcactagataataagtttcagacagtataaattgtcaaagttcattttt |
115 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51994554 |
cctgtgttcaattccaacaaatttaaggtgcaaaatggcaataaaacaggagcactagataataagtttcagacagtataaattgtcaaagttcattttt |
51994653 |
T |
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| Q |
116 |
agagag |
121 |
Q |
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|||||| |
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| T |
51994654 |
agagag |
51994659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 51994871 - 51994908
Alignment:
| Q |
319 |
caacacataaactattcattctgctgcacatggattgt |
356 |
Q |
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| T |
51994871 |
caacacataaattattcattctgctgcacatggattgt |
51994908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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