View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9801_9 (Length: 340)
Name: NF9801_9
Description: NF9801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9801_9 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 30 - 340
Target Start/End: Complemental strand, 5774619 - 5774313
Alignment:
| Q |
30 |
gttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctacggact |
129 |
Q |
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| T |
5774619 |
gttgaggtaactgttgttagtgtatgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctgctgact |
5774520 |
T |
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| Q |
130 |
gacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttatnnnnnnnnnttgtggaaattttgtgttatttagaatgtaa |
229 |
Q |
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| T |
5774519 |
gacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttataaaaaggaattgtggaaattttgtgttatttagaatgtaa |
5774420 |
T |
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| Q |
230 |
ctaatcgaatgagtaaagttatatatataatagtatttcacctaggcatttgaaaaatttctgcacacgcacatgtgcttcatctctgatttttcacctt |
329 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
5774419 |
ctaatcgaatgagtaaagt----tatataatagtatttcacctaggcatttgaaaaatttctgcacacacacatgtgcttcatctctgatttttaacctt |
5774324 |
T |
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| Q |
330 |
tcttctttcca |
340 |
Q |
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||||||||||| |
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| T |
5774323 |
tcttctttcca |
5774313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 5768348 - 5768189
Alignment:
| Q |
30 |
gttgaggtaactgttgttagtgtgtgcgtgcttgcaggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctacggact |
129 |
Q |
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||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| | | ||| |
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| T |
5768348 |
gttgaggtaaccgttgttagtgtatgcgttcttgaaggaggctgaattgctggttaacgtaagatatcacgagcttgtgccagaacatcaggtgctgacc |
5768249 |
T |
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| Q |
130 |
gacaatgagaagaaaaccgtacttgagagatacactgttaaagaaactcaggtcagttat |
189 |
Q |
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| T |
5768248 |
gacaatgagaagaaaaccttactcgagagatacaccgttaaagaaactcaggtcagttat |
5768189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 186
Target Start/End: Original strand, 465679 - 465800
Alignment:
| Q |
65 |
aggaggctgaattgctggttaatgtaagatatcacaagcttgtgccagaacatcagctacggactgacaatgagaagaaaaccgtacttgagagatacac |
164 |
Q |
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||||||| || |||||||||||| ||| | | || ||||||||| ||||||||| | | | ||||| |||||||||||| | |||||||||||||| |
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| T |
465679 |
aggaggcagagttgctggttaatataaaagagcatgtgcttgtgcctgaacatcagattctcaatgacaccgagaagaaaaccttgcttgagagatacac |
465778 |
T |
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| Q |
165 |
tgttaaagaaactcaggtcagt |
186 |
Q |
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||| || ||||||||||||||| |
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| T |
465779 |
tgtcaaggaaactcaggtcagt |
465800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 5768171 - 5768137
Alignment:
| Q |
210 |
ttgtgttatttagaatgtaactaatcgaatgagta |
244 |
Q |
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| T |
5768171 |
ttgtgttatttagaatgtgactaatcgaatgagta |
5768137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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