View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9802_high_1 (Length: 526)
Name: NF9802_high_1
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 7 - 509
Target Start/End: Complemental strand, 867005 - 866507
Alignment:
| Q |
7 |
caaacaccacattgacactgatactatttaagaaaataaataattgaatata--aaacatttgccgatgccaaacactgacactgacacaagtgtcagat |
104 |
Q |
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| T |
867005 |
caaacaccacattgacactgatactatttaagaaaataaagaattgaatatataaaacatttgccgatgccaaacactgacac------aagtgtcagat |
866912 |
T |
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| Q |
105 |
cctaaacaaatttttaatttgaagtgtcgatgattattaaattcagcaagaactttctttgttagaagtgattccaccacttgatggattccctctttga |
204 |
Q |
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| T |
866911 |
cctaaacaaatttttaatctgaagtgtcgatgattattaaattcagcaagaactttctttgttagaagtgattccaccacttgatggattccctctttga |
866812 |
T |
|
| Q |
205 |
agacaatcaacaggaggaacaatttcagttttcaactcaccatatgctttccaacagaaaggaactttggagttttggcttgattcaagctttattgtat |
304 |
Q |
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| T |
866811 |
agacaatcaacaggaggaacaatttcagttttcaattcaccatatgctttccaacaaaaaggaacattggagttttggcttgattcaagctttattgtat |
866712 |
T |
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| Q |
305 |
cgagggttatacctttacaaggtaagctatcactacatgcaaaataaataggttctttagtgtaagttccatgtacatttacataatgtatgcttgatac |
404 |
Q |
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| T |
866711 |
caagggttatacctttacaaggtaagctatcactacatgcaaaataaataggttctttagtgtaagttccatgtacatttgtataatgtatacttgatac |
866612 |
T |
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| Q |
405 |
tgccacagctgatgttacattatgacactttccaccgtcacaatagaattgatcaatcattattggagtttttacatcagaaacttgaatgtttgagaac |
504 |
Q |
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| T |
866611 |
tgccacagctgatgttacattacgacactttccaccatcacaatagaattgatcaatcattattggagtttttacatcagaaacttgaatgtttgagaac |
866512 |
T |
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