View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9802_high_18 (Length: 243)
Name: NF9802_high_18
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 46920984 - 46920759
Alignment:
| Q |
1 |
tttctatgaggcatttcatcaaacatgttacaagcatcaccgcgaaacccagttttacaatacatatcaaaacaactacacccaacaaacacatcatata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920984 |
tttctatgaggcatttcatcaaacatgttacaagcatcaccgtgaaacccagttttacaatacatatcaaaacaactacacccaacaaacacatcatata |
46920885 |
T |
|
| Q |
101 |
tcatcccaccctttaaagcaagaccgtgaatctgtttaccagtcatgggtatctgcaaaagagcagaagctttgaaaacacacggaaaagtgaagtcgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46920884 |
tcatcccaccctttaaagcaagaccgtgaatctgtttaccagtcatgggtatctgcataagagcagaagctttgaaaacacacggaaaagtgaagtcgtt |
46920785 |
T |
|
| Q |
201 |
aggttgaacattatcacgacgcatgt |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
46920784 |
aggttgaacattatcacgacgcatgt |
46920759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 46891742 - 46891937
Alignment:
| Q |
1 |
tttctatgaggcatttcatcaaacatgttacaagcatcaccgcgaaacccagttttacaatacatatcaaaacaactacacccaacaaacacatcatata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | | || ||||||||| ||| ||||||||||| || |||||||||||| |||||||||| |
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| T |
46891742 |
tttctatgaggcatttcatcaaacatgttacaagcatcaac-caaagcccagttttgcaacacatatcaaaagcaccacacccaacaaatacatcatata |
46891840 |
T |
|
| Q |
101 |
tcatcccaccctttaaagcaagaccgtgaatctgtttaccagtcatgggtatctgcaaaagagcagaagctttgaaaacacacggaaaagtgaagtc |
197 |
Q |
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| T |
46891841 |
tttgaccatcctttaatgctaaaccatgaacttgttaaccactcatggacatgttcaaagaatcagaagctttgaaaacacattgaaaagttaagtc |
46891937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 38311141 - 38310916
Alignment:
| Q |
1 |
tttctatgaggcatttcatcaaacatgttacaagcatcaccgcgaaacccagttttacaatacatatcaaaacaactacacccaacaaacacatcatata |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311141 |
tttctttgaggcatttcatcaaacatgttacaagcatcaccgcgaaacccagttttacaatacatatcaaaacaactacacccaacaaacacatcatata |
38311042 |
T |
|
| Q |
101 |
tcatcccaccctttaaagcaagaccgtgaatctgtttaccagtcatgggtatctgcaaaagagcagaagctttgaaaacacacggaaaagtgaagtcgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38311041 |
tcatcccaccctttaaagcaagaccgtgaatctgtttaccagtcatgggtatctgcacaaaagcagaagctttgaaaacacacggaaaagtgaagtcgtt |
38310942 |
T |
|
| Q |
201 |
aggttgaacattatcacgacgcatgt |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
38310941 |
aggttgaacattatcacgacgcatgt |
38310916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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