View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9802_high_20 (Length: 240)
Name: NF9802_high_20
Description: NF9802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9802_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38142710 - 38142486
Alignment:
| Q |
1 |
tctctaaatgtaatatatatttaatgggtaaatgcttgatatgtacaaatttaaaaccttttgtgtggtatt--ttttgacgttgcatgaaaatgtgtct |
98 |
Q |
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| T |
38142710 |
tctctaaatgtaatatatatttaatgggtaaatgcttgatatgtacaaatttaaaaccttttgtgtggtattttttttgacgttgcatgaaaatgtgtct |
38142611 |
T |
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| Q |
99 |
ctcgcattataaaaacagtatatnnnnnnnntgcgttcctacaaataaaaagtgttattactccactatacttttacatcattttcaattttacttgctg |
198 |
Q |
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| T |
38142610 |
ctcgcattataaaaacagtatataaaaaaaatgtgttcctacaaataaaaagtgttattactccactatacttttacatcattttcaattttacttgctg |
38142511 |
T |
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| Q |
199 |
gatttttcgttgaatatttgcatgt |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
38142510 |
gatttttcgttgaatatttgcatgt |
38142486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 38156020 - 38155924
Alignment:
| Q |
19 |
atttaatgggtaaatgcttgatatgtacaaatttaaaaccttttgt-gtggta-ttttttgacgttgcatgaaaatgtgtctctcgcattataaaaa |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||| | ||||||||| |
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| T |
38156020 |
atttgatgggtaaatgcttgatatgtacaaatttaaaaccttttgtggtggtatttttttgacgttgcctgaaaatgtgtctctccccttataaaaa |
38155924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 38155910 - 38155832
Alignment:
| Q |
145 |
aaaaagtgttattactccactatacttttacatcattttcaattttacttgctggatttttcgttgaatatttgcatgt |
223 |
Q |
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|||| ||||||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
38155910 |
aaaatgtgttattactgcactatacttctacattatttcatattttacttgctggatttttcgttgaatacttgcatgt |
38155832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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